Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30447
(892 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07) 31 0.95
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10) 30 2.2
SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015) 30 2.9
SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 29 5.1
SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.7
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40) 29 6.7
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51) 29 6.7
SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06) 28 8.8
SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 28 8.8
SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 32.7 bits (71), Expect = 0.41
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 307 QRPQFQPRAETSIPAPKVAISTEMDDAPLDCVLMKGLPRGATDRTIVTFLADTGA--VPA 480
Q P F P +P P V + DC+ ++GLP AT + ++ FL + A P
Sbjct: 433 QHPPFHP--PMFLPGP-VPYAANGGSNAKDCLRLRGLPFSATVQDVLDFLKEHAAYVAPG 489
Query: 481 RIHLMLDT 504
+H++ +T
Sbjct: 490 GVHMVYNT 497
>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
Length = 1118
Score = 31.5 bits (68), Expect = 0.95
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +2
Query: 278 ILARPPRTGHNDPSSSLEQKRRSRHPKLPSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSW 457
++ RPP T +N P S + S HPKLP + + + S A + S+ S
Sbjct: 110 VIDRPPITANNTPDSMDNSNQPSVHPKLPISESSKEKSTPPNTPQTSSKALEKPSSTSSS 169
Query: 458 RTPE 469
+ P+
Sbjct: 170 KPPQ 173
>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
Length = 260
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 531 CEFRSAQEARMAAAKHGKDLEGCRITVDL 617
C+F +A A +A AK G+D+EG +I D+
Sbjct: 96 CDFEAAVAA-VAIAKEGRDVEGAKIVADI 123
>SB_360| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
Length = 251
Score = 29.9 bits (64), Expect = 2.9
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +2
Query: 431 QIAPSSRSWRTPEPSRRGYISCSTPTTAFRRLLLRIPLGTRSEDG 565
Q +P+++ + E RGY +C +P+ A RRL LRI + + + G
Sbjct: 41 QTSPAAKHVLSNESCCRGY-ACGSPSHAPRRLYLRIDVASLGKTG 84
>SB_39564| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 29.1 bits (62), Expect = 5.1
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 216 SRSRRWLSEHRSSRLPWGL-CRSSHGRQELGTTTPVPASSRNVDPGTQSCHLDGNGRRAT 392
+R+ L++H S + + +H + L T T S+R+++ TQ H D + + A
Sbjct: 9 ARTLNTLTQHAHSTCTLNMHTQHAHSTRSLNTHTQHAHSTRSLNTHTQHAHSDTHTQHAR 68
Query: 393 RLRT 404
+RT
Sbjct: 69 SIRT 72
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 29.1 bits (62), Expect = 5.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 290 PPRTGHNDPSSSLEQKRRSRHPKLPSRR 373
PPR + P S RRSRHP RR
Sbjct: 476 PPRRSRHPPRRSRHPPRRSRHPPRRQRR 503
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 290 PPRTGHNDPSSSLEQKRRSRHPKLPSR 370
PPR + P S RRSRHP SR
Sbjct: 469 PPRRSRHPPRRSRHPPRRSRHPPRRSR 495
>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 735 TRTFSGNRGSKRGSFRPKEGFG*PRLAFINSLNSFDSKFP 854
TR FSG +G R S + G G PR+A+ L + + +FP
Sbjct: 503 TRRFSGAKGDARSSTKGGGGRGAPRVAYQKDL-AKNRRFP 541
>SB_3322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 28.7 bits (61), Expect = 6.7
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Frame = +1
Query: 280 PRTAAKNWAQRPQFQPRAETSIPAPKVAISTEMDDAPLDCVL-MKGLPRGATDRTIVTFL 456
PRTA + A+ P+ +PR E A VA E+ AP++ ++ P A+++ + L
Sbjct: 541 PRTAQSDRAEEPREEPRLECYENAIHVASCEEIVPAPVEEIIPTTPPPSRASEQAKNSIL 600
Query: 457 AD--TGAVP-ARIHLMLDTNDCLPETASANSARHKKRGWRRQNM 579
+D VP IH+ + + ++N++ RG R+ +
Sbjct: 601 SDEVEDDVPELTIHVDVSLPGTPLGSENSNNSGRSSRGVPRKKL 644
>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
Length = 933
Score = 28.7 bits (61), Expect = 6.7
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 4/72 (5%)
Frame = +2
Query: 320 SSLEQKRRSRHPKL----PSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSWRTPEPSRRGY 487
S + K RSR+ P R W+ S + R SPA AP+ SW R
Sbjct: 632 SQEDNKERSRNSSTIESSPKRFSWSQEDSRVQM-RNSPAVTDGAPNRFSWSQENNKERSR 690
Query: 488 ISCSTPTTAFRR 523
S ST ++ +R
Sbjct: 691 NSSSTSESSPKR 702
>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
Length = 1039
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 311 DPSSSLEQKRRSRHPKLPSRR-KWTTRHSTAYL*RVSPAAPQIAPSSRSWRTPEPS 475
DPS + +++ R +P + KW+TR Y +S + PSS + R EPS
Sbjct: 842 DPSIAHRYRKQGRPVPVPGKGGKWSTRTKARYSRFLSTRSLTGFPSSGNTRAGEPS 897
>SB_46988| Best HMM Match : HEAT (HMM E-Value=8.6e-06)
Length = 1231
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 745 KVRVVKILRASVRKNGRRRTFPSNEGL 665
+ +++ LRASVR+NG R F GL
Sbjct: 46 RAAIIEELRASVRRNGGRLLFEDRHGL 72
>SB_37786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 28.3 bits (60), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +3
Query: 252 SRLPWGLCRSSH--GRQELGTTTPVPASSRNVDPGTQSCHLDGNGRR 386
+RLP+ LC S R+ +PVPA++ +DP T++ NG R
Sbjct: 245 TRLPYHLCNSHPCPPRKRQRANSPVPAAAVVLDPQTRTLEQMLNGVR 291
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 28.3 bits (60), Expect = 8.8
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Frame = +1
Query: 262 PGGSVDP-RTAAKNWAQRPQFQPRAETSIP--APKVAISTEMDDAPLDCVLMKGLPRGAT 432
P S D + K P+ P+A T PK +I+T + K P+ +T
Sbjct: 1516 PKASTDTAKVTPKASTDAPKVTPKASTDAAKVTPKASINTAKVALKVSTEAGKVTPKAST 1575
Query: 433 DRTIVTFLADTGAVPARIHLMLDTNDCLPETASANSAR 546
D VT A T A D+ P+ AS ++A+
Sbjct: 1576 DAAKVTPKASTEAAKVTPKASTDSTKVTPK-ASTDAAK 1612
>SB_23752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 28.3 bits (60), Expect = 8.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 413 VSPAAPQIAPSSRSWRTPEPSRRGYISCSTPTTA 514
V P+ +P+SR TP P++RG + TPTT+
Sbjct: 400 VQPSGINQSPASRP--TPPPNKRGTEALKTPTTS 431
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,096,065
Number of Sequences: 59808
Number of extensions: 602483
Number of successful extensions: 1881
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1873
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -