Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30447
         (892 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA ...    34   0.12 
AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    31   1.1  
AL032631-13|CAA21577.2|  220|Caenorhabditis elegans Hypothetical...    29   5.9  
Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z70038-8|CAA93887.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 304 AQRPQFQPRAETSIPAPKVAISTEM-DDAPLDCVLMKGLPRGATDRTIVTFLAD 462
           A+  Q   R      +P VA + E  ++   DCV ++GLP  AT + IVTFL D
Sbjct: 358 AEVQQVVKRCNLINSSPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGD 411


>Z68319-6|CAA92704.2|  618|Caenorhabditis elegans Hypothetical
           protein ZK1067.6 protein.
          Length = 618

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 304 AQRPQFQPRAETSIPAPKVAISTEM-DDAPLDCVLMKGLPRGATDRTIVTFLAD 462
           A+  Q   R      +P VA + E  ++   DCV ++GLP  AT + IVTFL D
Sbjct: 358 AEVQQVVKRCNLINSSPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGD 411


>AY220985-1|AAO65265.1|  618|Caenorhabditis elegans putative RNA
           binding protein SYM-2 protein.
          Length = 618

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 304 AQRPQFQPRAETSIPAPKVAISTEM-DDAPLDCVLMKGLPRGATDRTIVTFLAD 462
           A+  Q   R      +P VA + E  ++   DCV ++GLP  AT + IVTFL D
Sbjct: 358 AEVQQVVKRCNLINSSPAVANAVEAPEEKKKDCVRLRGLPYEATVQHIVTFLGD 411


>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +1

Query: 259 FPGGSV---DPRTAAKNWAQRPQFQPRAETSIPAPKVAISTEM 378
           +P G+V   DP + A N  + P+ QP   + +P PK  I+ ++
Sbjct: 302 YPNGNVPLWDPASGASNTVKIPKSQPGGRSPLPLPKTEITPDV 344


>AL032631-13|CAA21577.2|  220|Caenorhabditis elegans Hypothetical
           protein Y106G6H.14 protein.
          Length = 220

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 301 WAQRPQFQPRAETSIPAPKVAISTE--MDDAPLDCVLMKG 414
           WA      P  +T +  PKVA+S +  + D PL     KG
Sbjct: 119 WASHGGHAPAVDTLLKDPKVAVSVQNKLGDTPLHAAAYKG 158


>Z98853-7|CAB57906.1| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 353 PKLPSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSWRTPEPSRRGYISCSTPTTAFRRLLL 532
           PK    RKW+T HS +      P   Q +  S  W   E   +  +S +T +T   R   
Sbjct: 608 PKEHMERKWSTTHSGSMGELQRPVTSQSSRKSSRWDVTEEDLKRKLS-ATSSTHNPRERA 666

Query: 533 RIPLGTRSED 562
            + L TR  +
Sbjct: 667 SVELETRQSE 676


>Z75530-10|CAA99796.2| 1675|Caenorhabditis elegans Hypothetical
           protein C47E8.8 protein.
          Length = 1675

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +2

Query: 353 PKLPSRRKWTTRHSTAYL*RVSPAAPQIAPSSRSWRTPEPSRRGYISCSTPTTAFRRLLL 532
           PK    RKW+T HS +      P   Q +  S  W   E   +  +S +T +T   R   
Sbjct: 608 PKEHMERKWSTTHSGSMGELQRPVTSQSSRKSSRWDVTEEDLKRKLS-ATSSTHNPRERA 666

Query: 533 RIPLGTRSED 562
            + L TR  +
Sbjct: 667 SVELETRQSE 676


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 690 GPFRATKGSGCLGPSNASSTTFAG 619
           GP + T+  GCLGP+   +TT  G
Sbjct: 668 GPGQRTRTRGCLGPNGQEATTCQG 691


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,523,618
Number of Sequences: 27780
Number of extensions: 436294
Number of successful extensions: 1438
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1435
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)