Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30447
         (892 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19090.1 68416.m02426 RNA-binding protein, putative similar t...    33   0.25 
At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein...    31   1.4  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    30   2.4  
At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid...    29   4.1  
At1g31870.1 68414.m03917 expressed protein                             29   5.5  
At5g16280.1 68418.m01901 expressed protein                             28   7.2  
At4g14310.2 68417.m02205 peroxisomal membrane protein-related co...    28   9.6  
At4g14310.1 68417.m02204 peroxisomal membrane protein-related co...    28   9.6  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    28   9.6  
At3g12730.1 68416.m01590 myb family transcription factor contain...    28   9.6  
At3g08670.1 68416.m01007 expressed protein                             28   9.6  

>At3g19090.1 68416.m02426 RNA-binding protein, putative similar to
           RNA-binding protein homolog GB:AAF00075 GI:6449448 from
           [Brassica napus]; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 455

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 256 GFPGGSVDPRTAAKNWAQRPQFQPRAETSIPAPKVA 363
           G  G S    TA K  AQ P+F PR+ T+ PAP+V+
Sbjct: 21  GGGGSSGAQATAFKFNAQAPEFVPRSHTTAPAPQVS 56


>At3g20890.1 68416.m02641 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative similar to SP|P52597
           Heterogeneous nuclear ribonucleoprotein F (hnRNP F)
           {Homo sapiens}; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 350

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +3

Query: 513 PSGDCFCEFRSAQEARMAAAKHGKDLEGCRITVDLVP 623
           P+G+ F EFR+A+++R A  K  K L G R  ++L P
Sbjct: 302 PTGEAFVEFRNAEDSRAAMVKDRKTL-GSRY-IELFP 336


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 525 CFCEFRSAQEARMAA-AKHGKDLEGCRITVDL 617
           CF EF  +++A  A   + G +L+GCR+ V+L
Sbjct: 48  CFVEFEHSRDAEDAIKGRDGYNLDGCRLRVEL 79


>At1g12480.1 68414.m01443 C4-dicarboxylate transporter/malic acid
           transport family protein contains Pfam profile PF03595:
           C4-dicarboxylate transporter/malic acid transport
           protein
          Length = 556

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 738 RTFSGNRGSKRGSFRPKEGF 797
           + FSGNRG  RG  RP  GF
Sbjct: 35  KRFSGNRGPNRGKQRPFRGF 54


>At1g31870.1 68414.m03917 expressed protein
          Length = 561

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 782 SKASAFRPSVPRKGPRGENPPRICAKERKAADLS 681
           S++S F  S PR+  R  +PP+I  ++RK   +S
Sbjct: 319 SRSSNFDSSPPRRPRRDSSPPQISKEQRKTGLIS 352


>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 496  LDTNDCLPETASANSARHKKRGWR 567
            ++TND LP+ A+  S+   + GWR
Sbjct: 1141 INTNDFLPDAAATTSSSGNQSGWR 1164


>At4g14310.2 68417.m02205 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 965

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 SHGRQELGTTTPVPASSRNVDPGTQ 356
           S G++ L + TP+P SS+N +P  Q
Sbjct: 67  SSGKKPLRSVTPLPISSKNSNPALQ 91


>At4g14310.1 68417.m02204 peroxisomal membrane protein-related
           contains weak similarity to Peroxisomal membrane protein
           2 (22 kDa peroxisomal membrane protein)
           (Swiss-Prot:P42925) [Mus musculus]
          Length = 1087

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 SHGRQELGTTTPVPASSRNVDPGTQ 356
           S G++ L + TP+P SS+N +P  Q
Sbjct: 67  SSGKKPLRSVTPLPISSKNSNPALQ 91


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 262 PGGSVDPRTAAKNWAQRPQFQPRAETSIPAPKVAISTEMD 381
           P GSV    A    A  P   P    S PAP  +I+ EMD
Sbjct: 359 PRGSVSAACAPTAGASVPAPIPPTVVSTPAPPASINAEMD 398


>At3g12730.1 68416.m01590 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 235

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 337 TSIPAPKVAISTEMDDAPLDCVLMKGLPRGATDRTIVTFLADTG 468
           T+ P P++  +TE+ +  +D V   G P  AT +TI+  +   G
Sbjct: 19  TTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKG 62


>At3g08670.1 68416.m01007 expressed protein 
          Length = 567

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 32/134 (23%), Positives = 43/134 (32%), Gaps = 2/134 (1%)
 Frame = +2

Query: 314 PSSSLEQKRRSRHPKLPSRRKWTTRHSTAYL*RVSPAAPQI--APSSRSWRTPEPSRRGY 487
           PSS   +   S  P  P+R    +R ST    R   ++  +  A  S S R   P+ R  
Sbjct: 193 PSSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRPSTPTSRPQ 252

Query: 488 ISCSTPTTAFRRLLLRIPLGTRSEDGGGKTWKXXXXXXXXXXXXXANVVEEALEGPKQPE 667
           +S S+P     R   R    TR                             +L  P  P 
Sbjct: 253 LSASSPNIIASRPNSRPSTPTRRSPSSTSLSATSGPTISGGRAASNGRTGPSLSRPSSPG 312

Query: 668 PFVARKGPPPSVLS 709
           P V      P VL+
Sbjct: 313 PRVRNTPQQPIVLA 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,705,985
Number of Sequences: 28952
Number of extensions: 410287
Number of successful extensions: 1345
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)