Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30445
         (452 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   0.44 
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   2.3  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   5.4  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   5.4  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    20   9.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   9.4  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.6 bits (51), Expect = 0.44
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 165 LEEVLPGFLEAXLPLRDGGVVRMSH 91
           L+++LP   E   P  + G VRMSH
Sbjct: 659 LKKLLPKVYEDYCPTSNSGSVRMSH 683


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 239 VSLQSWKYLCNSRDAANICVLVSMSSRRSCQV 144
           VSL  +K L + R A  I +     SR +C++
Sbjct: 212 VSLPQFKVLGHRRRAVEISLTTGNYSRLACEI 243


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 217 YFHDCKDTLQR 249
           YF  C DTLQR
Sbjct: 94  YFKGCIDTLQR 104


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 217 YFHDCKDTLQR 249
           YF  C DTLQR
Sbjct: 94  YFKGCIDTLQR 104


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 239 VSLQSWKYLCNSRDAANICVLVSMSSRRSCQV 144
           VSL  +K L + + A  I +     SR +C++
Sbjct: 30  VSLPQFKVLGHRQRAMEISLTTGNYSRLACEI 61


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 171 RDEDTDVGGVPRVAQVL 221
           R + T VG VP + QVL
Sbjct: 59  RSDGTAVGDVPGLRQVL 75


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,553
Number of Sequences: 336
Number of extensions: 1350
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)