Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30445
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    28   0.58 
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    25   5.4  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    24   9.5  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 91  MGHSDNATIAQWKXGLKET 147
           +GH DNATIAQ K G ++T
Sbjct: 375 VGHVDNATIAQSKGGSQQT 393


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 290 RDAISVSALGASTHNFMQDLTTLQQSV 370
           R+  +  A+G  THNF ++L T  Q V
Sbjct: 190 RNDSNKEAMGGDTHNFFKELKTSGQLV 216


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +1

Query: 133 GLKETWQDLL---ELIETRTQMLAASRELHKYFHDCK 234
           G+ E  Q LL   E+ E  TQ+ A  ++L    H CK
Sbjct: 364 GVLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCK 400


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,670
Number of Sequences: 5004
Number of extensions: 21742
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)