Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30445
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0751 - 27389910-27392105                                         28   4.0  
08_02_0691 + 20076168-20076347,20076736-20077023,20077418-200774...    27   5.3  
06_01_0329 + 2383305-2384057,2385423-2385469,2386383-2386815,238...    27   5.3  
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    27   9.3  

>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 174 LDELEEVLPGFLEAXLPLRDGGVVRMSHGDHLIGDTLSRADSLRAHR 34
           +DE ++ LPG  +  + L  GGV +       I   +S+A+ L+  +
Sbjct: 227 VDEAQKFLPGSDKVVIDLEAGGVAKRQEAGKAISLNVSKAEVLKVKK 273


>08_02_0691 +
           20076168-20076347,20076736-20077023,20077418-20077496,
           20077681-20077736
          Length = 200

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -1

Query: 197 AANICVLVSMSSRRSCQVSLRPXFHCAMVALSECPMAII*SAIRSAVPTRSEPTD 33
           A+++ V V     R+  V+L+     ++V L   P+A+   AIR AV    E T+
Sbjct: 3   ASHVAVRVQGEGSRANAVALQVSLAASLVVLPVVPVALSLHAIRIAVSGTGEDTE 57


>06_01_0329 +
           2383305-2384057,2385423-2385469,2386383-2386815,
           2386852-2387034,2388388-2389044
          Length = 690

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 287 GRDAISVSALGASTHNFMQDLTTLQQSVWQSIK 385
           G DA+ V A+G S H+ + D     QS+WQ +K
Sbjct: 175 GDDAVGVVAVGVSVHHAVAD----GQSLWQFMK 203


>01_07_0374 +
           43144861-43144998,43145695-43145794,43146499-43146651,
           43147383-43150081
          Length = 1029

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 129 GGPQGNLAGPPRAHRDEDTDVGGVPRVAQVLPRLQ 233
           GG  G LA       +ED D GG+  VA+  P++Q
Sbjct: 542 GGVGGTLAVADGKEEEEDNDAGGIDDVAE--PQVQ 574


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212,855
Number of Sequences: 37544
Number of extensions: 197473
Number of successful extensions: 751
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)