Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30445
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42689| Best HMM Match : Spectrin (HMM E-Value=0) 115 2e-26
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_32817| Best HMM Match : Spectrin (HMM E-Value=3.7e-21) 47 6e-06
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0) 47 6e-06
SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.012
SB_33210| Best HMM Match : Spectrin (HMM E-Value=1.3e-12) 30 1.0
SB_20679| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_5171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_22341| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 27 9.6
SB_41489| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_47352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035) 27 9.6
SB_7706| Best HMM Match : Spectrin (HMM E-Value=0) 27 9.6
SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8) 27 9.6
>SB_42689| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1317
Score = 115 bits (277), Expect = 2e-26
Identities = 48/85 (56%), Positives = 66/85 (77%)
Frame = +1
Query: 1 ERFKEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETR 180
E+F++FAR+T +G+ERV + + DQ+I GHSD ATIA+WK G+ E+W DLLELIETR
Sbjct: 803 EKFRDFARDTTHIGTERVASTNGVCDQLIGTGHSDAATIAEWKDGINESWADLLELIETR 862
Query: 181 TQMLAASRELHKYFHDCKDTLQRVK 255
T+ML A+ ELHKY+HD K+ L ++
Sbjct: 863 TKMLEAALELHKYYHDAKEVLAMIQ 887
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/78 (30%), Positives = 42/78 (53%)
Frame = +1
Query: 4 RFKEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRT 183
+ KEF ++ +V + RV +A+++I GH+ + I Q + L E W L + R
Sbjct: 1460 KMKEFDQDL-AVDAARVEAINVLAEKLIGQGHAGSVRIQQRQNALTERWNRLQDKASERR 1518
Query: 184 QMLAASRELHKYFHDCKD 237
Q LA + E+H + +C+D
Sbjct: 1519 QKLAEACEIHAFNRNCRD 1536
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 1 ERFKEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETR 180
++ + FA E + S RV ++AD++I GH+ +A + + + E W+ L L
Sbjct: 226 QKLERFATEIATKCS-RVSDINQLADELIQDGHAHSAAVKAKRKEINERWEKLQRLKVKE 284
Query: 181 TQMLAASREL 210
+ LA L
Sbjct: 285 EENLAEKHGL 294
Score = 33.1 bits (72), Expect = 0.11
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +1
Query: 22 RETQSVGSERVGTAERI---ADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQML 192
+E Q+ R + E ADQ++ G+ I +++TW L + TRTQ L
Sbjct: 2551 QELQTEIDSRANSVEEFQSRADQLLGSGNPSAEDIRNKSSHVRDTWDRLGASLRTRTQQL 2610
Query: 193 AASRELHKY 219
++E+ ++
Sbjct: 2611 QHNKEIQRF 2619
Score = 32.3 bits (70), Expect = 0.19
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +1
Query: 73 ADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQMLAASRELHKYFHDCKD 237
A +++ H D+ I+ + L+E + L L++TR L S++LH+Y + ++
Sbjct: 1014 ARRLVQSSHFDSEKISSTQRDLEEQFCGLNTLVKTRHTRLTESKKLHEYRREVEE 1068
Score = 31.9 bits (69), Expect = 0.26
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 73 ADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQMLAASRELHKYFHD 228
A ++++ GH ++ TI L+ ++ LL L + R +L + LH++ +D
Sbjct: 802 AQELVSQGHFNSDTIKSDSENLQSRYRSLLCLTDKRRSVLEDAFALHQFIYD 853
Score = 31.9 bits (69), Expect = 0.26
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +1
Query: 76 DQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQMLAASRELHKYF 222
+Q++ GH I L E W++L +TR + L AS H+Y+
Sbjct: 2145 EQLVLRGHYAERDIGAKSQMLLELWEELRINAQTRNEKLQASLATHQYY 2193
Score = 28.3 bits (60), Expect = 3.1
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 10 KEFARETQSVGSER-VGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQ 186
K A E++ ER + + +Q+I+ GH + + L W++LLE T+ +
Sbjct: 1354 KHQAFESELTAHERAIDSVRDKGEQLISCGHFAASEVEVRIEALYIQWEELLEASATKGR 1413
Query: 187 MLAASRELHKYFH 225
L +R+ H+ F+
Sbjct: 1414 KLQEARD-HQQFN 1425
>SB_32817| Best HMM Match : Spectrin (HMM E-Value=3.7e-21)
Length = 217
Score = 47.2 bits (107), Expect = 6e-06
Identities = 24/76 (31%), Positives = 41/76 (53%)
Frame = +1
Query: 10 KEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQM 189
KEF ++ +V + RV +A+++I GH+ + I Q + L E W L + R Q
Sbjct: 2 KEFDQDL-AVDAARVEAINVLAEKLIGQGHAGSVRIQQRQNALTERWNRLQDKASERRQK 60
Query: 190 LAASRELHKYFHDCKD 237
LA + E+H + +C+D
Sbjct: 61 LAEACEIHAFNRNCRD 76
>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 934
Score = 47.2 bits (107), Expect = 6e-06
Identities = 22/80 (27%), Positives = 41/80 (51%)
Frame = +1
Query: 1 ERFKEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETR 180
++F +F ++ Q+ RV +ADQ+ GH D I+ + + E W+ L L R
Sbjct: 193 KKFDDFLKDLQA-NESRVTYINDLADQLAEEGHPDMELISMKQQEVNEAWERLKRLAVMR 251
Query: 181 TQMLAASRELHKYFHDCKDT 240
+ L ++ E+H ++ D +T
Sbjct: 252 KERLESAHEIHSFYRDADET 271
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 82 MIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQMLAASRELHKYFHDCKDT 240
+IA H I++ L+E + LLEL E R EL + DC+ T
Sbjct: 392 LIAADHYAKDEISEKLTTLEEEKKGLLELWEKRKNQFEQCMELQIFIRDCEHT 444
>SB_20870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2032
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = -1
Query: 239 VSLQSWKYLCNSRDAANICVLVSMSSRRSCQVSLRPXFHCAMVALSECPMAII 81
VSL S++ + + A++CV VS++S R + + P C V+L+ C + I
Sbjct: 515 VSLTSFRVVYIGVEPAHVCVFVSLTSFRVVYIGVEPAHVCVFVSLTSCCVVYI 567
Score = 33.1 bits (72), Expect = 0.11
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -1
Query: 239 VSLQSWKYLCNSRDAANICVLVSMSSRRSCQVSLRPXFHCAMVALSECPMAII 81
VSL S++ + + A++CV VS++S + + P C V+L+ C + I
Sbjct: 536 VSLTSFRVVYIGVEPAHVCVFVSLTSCCVVYIGVEPAHVCVFVSLTSCCVVYI 588
>SB_33210| Best HMM Match : Spectrin (HMM E-Value=1.3e-12)
Length = 186
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +1
Query: 10 KEFARETQSVG-SERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQ 186
K A ET + ERV +A+++ + D+ I K + + W+ LL LI+ R
Sbjct: 31 KHEAIETDIMAYEERVNAIVAVAEELHRENYHDSERIQVCKGRIIQLWELLLVLIKQRRV 90
Query: 187 MLAASRELHKYFHD 228
L +L + F +
Sbjct: 91 RLEKCMQLQRVFQE 104
>SB_20679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 94 PWRSSDRRYAQPCRLAPSPPTGSRARTP 11
P R S YA+ CR++ S P G R P
Sbjct: 32 PSRDSQAPYAKSCRVSESRPAGKRESAP 59
>SB_5171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 414 YASSSCEXLIFMDCHTDCCSVVRS 343
Y SS E L +DCH + CS + S
Sbjct: 69 YTSSDTEYLTVVDCHGNACSFIDS 92
>SB_23680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 115 IAQWKXGLKETWQDLLELIETRTQMLAASRELHKYFHDCKDTLQRVKSD 261
I QW + ETW+D+ + E +A R + KY + + ++ + D
Sbjct: 501 ITQWTQRMAETWRDMSD-DEKEMYRMANRRAVEKYNEEVTEWKEKHEKD 548
>SB_22341| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 459
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 115 WWRCQNVPWRSSDRRYAQPCRLAPSPPTGSRAR 17
WWR +N+ W+ R Q A TG +R
Sbjct: 221 WWR-ENITWQLRQRNKTQTANFAELQETGPHSR 252
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 26.6 bits (56), Expect = 9.6
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 1 ERFKEFARETQSVGSERVGTAERIADQMIAMGHSDNAT---IAQWKXGLKETWQDLLELI 171
++ K +E G R+ T + + ++ G ++ + I Q E W DL + +
Sbjct: 1524 DQLKNIEKELDEQGI-RLQTLHKTGEDLLRDGDPEDPSTKDIQQQLADFDECWNDLAKQV 1582
Query: 172 ETRTQMLAASRELHKYFHD 228
R L +S+ K FH+
Sbjct: 1583 IERIHTLESSQSKLKEFHE 1601
>SB_41489| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +1
Query: 1 ERFKEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETR 180
E+F+EF + T + +E T ++ D+M WK + T + LLE+++ R
Sbjct: 142 EKFEEF-QSTLTKSNEMFVTFKKEMDKMTKTIKKLEKENKTWKSRFEGTNRSLLEMLDER 200
Query: 181 TQM 189
+M
Sbjct: 201 AKM 203
>SB_47352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 55
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 144 NLAGPPRAHRDEDTDVGGVPRVAQVL 221
N GP RAHRD G +P + L
Sbjct: 24 NFQGPSRAHRDTTRSGGALPSIKPYL 49
>SB_21158| Best HMM Match : Chromo (HMM E-Value=0.00035)
Length = 132
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +1
Query: 13 EFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQML 192
+F R+ + +V ERI Q I + D + +WK W LE T+ L
Sbjct: 27 DFQRKRKYKSGSKVYDVERIISQRITSRNGDKEYLVKWKNW--PIWTSTLEPANHLTEAL 84
Query: 193 AAS 201
S
Sbjct: 85 IRS 87
>SB_7706| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 686
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = +1
Query: 49 RVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETRTQML 192
R+ ++ + GH + I GL+E W +L L + R L
Sbjct: 328 RIAAVTECGNKFVEEGHGNADEIKARVDGLQEKWDELKSLADARQHKL 375
>SB_2876| Best HMM Match : Peptidase_C2 (HMM E-Value=2.8)
Length = 947
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 76 DQMIAMGHSDNATIAQWKXGLKET-WQDLLELIETRTQMLAASRELHK 216
D ++ H+D A + Q+K G++ + W + L+ T T +A R L +
Sbjct: 560 DHLLNFEHADGAHLIQYKDGVRRSQWYHIRALVLTYTN-IALRRMLRR 606
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,407
Number of Sequences: 59808
Number of extensions: 211078
Number of successful extensions: 943
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 943
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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