Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30445
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18770.1 68416.m02382 expressed protein                             27   4.5  
At2g17110.1 68415.m01974 expressed protein                             27   4.5  
At1g53340.1 68414.m06046 DC1 domain-containing protein contains ...    27   4.5  
At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containi...    27   5.9  
At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family pr...    27   7.8  
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr...    27   7.8  

>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 239 VSLQSWKYLCNSRDAANICVLVSMSSRRSCQVSLRPXFHCAMVALSECPMAI 84
           + L+S     +SR+ +   ++ S SS  S   S+RP      +AL ECP A+
Sbjct: 32  IILESRTPFMSSRNFSGEQMICSPSSSSSSSSSVRPRDKWFNLALRECPAAL 83


>At2g17110.1 68415.m01974 expressed protein
          Length = 733

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = +1

Query: 1   ERFKEFARETQSVGSERVGTAERIADQMIAMGHSDNATIAQWKXGLKETWQDLLELIETR 180
           +R  E   E Q V S R           IA+   D  ++   K   +E W  L ELI+  
Sbjct: 437 KRMDERGAENQKVDSTRKLVRSLSTKIRIAIQVVDKISVTINKIRDEELWLQLNELIQGL 496

Query: 181 TQMLAASRELHK 216
           ++M  +  E HK
Sbjct: 497 SKMWKSMLECHK 508


>At1g53340.1 68414.m06046 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 667

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 174 LDELEEVLPGFLEAXLPLRDGGVVRMSHGDHLIGDTLSRAD 52
           L+ + E L   +E  + + DG ++  SHG HL  DT    D
Sbjct: 332 LEGVPEELEIIVEPFITISDGIILHFSHGHHLKLDTSKAYD 372


>At1g02420.1 68414.m00189 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile: PF01535 PPR
           repeat
          Length = 491

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 43  SERVGTAERIADQMIAMGHSDNAT 114
           + R+G A+++ D+M+  G S NAT
Sbjct: 329 ARRLGDADKLVDEMVKKGLSPNAT 352


>At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 674

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 163 ELIETRTQMLAASRELHKYFHDCKDTLQRVKS 258
           EL+  R+Q++  S+  H  F + +  +QR+KS
Sbjct: 74  ELLLPRSQLVVYSQSAHLCFEEMQIVMQRIKS 105


>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 284

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
 Frame = +1

Query: 19  ARETQSVGSERVGTAERIADQMIAMGH--------SDNATI-AQWKXGLKETWQDLLELI 171
           AR++Q  G E++   E++ +  + +G+        +D ATI       LKE   ++ +L 
Sbjct: 5   ARKSQKAGREKL-RREKLNEHFVELGNVLDPERPKNDKATILTDTVQLLKELTSEVNKLK 63

Query: 172 ETRTQMLAASRELHKYFHDCKDTLQRVKSD 261
              T +   SREL +  +D ++    +KSD
Sbjct: 64  SEYTALTDESRELTQEKNDLREEKTSLKSD 93


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,243,564
Number of Sequences: 28952
Number of extensions: 132201
Number of successful extensions: 388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)