Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30444
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    28   1.9  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    27   4.5  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   4.5  

>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 553 FLESILKLSIVTALVVGE-RGRNVYKDPSIVKEL 651
           FLE++ KL IV  L++GE   R +++  S+ K L
Sbjct: 287 FLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTL 320


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 334 YQDYQGYENQEVNVTPKKEVYTERFVSSTPIASTTEKYRTRSRVKAVTVAPTYKTVLLTK 513
           ++D     +Q+VN +   +  +E   + TPI S+  K +TRS+   +      +  LL +
Sbjct: 235 FEDKGLVSDQDVNHSIDSDDQSEHEQAETPIPSSKNKRKTRSQRNKIRQRREEELRLLEQ 294

Query: 514 K*HRQL 531
           K + +L
Sbjct: 295 KKNEEL 300


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/40 (35%), Positives = 26/40 (65%)
 Frame = +3

Query: 450 NKVQSESCDCRSDIQNCAVNQEVAPSASYTESEAVSGIDS 569
           N   S S + R  +++ AVN   +P+A++ +S++ SG+DS
Sbjct: 429 NDSSSASIEKRG-MRSLAVNGVYSPAAAFLQSKSWSGLDS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,529,468
Number of Sequences: 5004
Number of extensions: 73403
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)