Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30444
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0015 - 31036091-31036202,31037839-31037916,31038408-310386...    31   1.2  
12_02_0900 - 24153734-24153943,24154461-24155110,24155198-241553...    30   2.7  
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578...    29   6.2  
02_02_0127 - 7038149-7038292,7038380-7038697,7038781-7038879,703...    29   6.2  
03_01_0137 - 1082786-1082846,1083850-1084142,1084250-1084550,108...    28   8.3  

>03_06_0015 -
           31036091-31036202,31037839-31037916,31038408-31038655,
           31038744-31038792,31038919-31039890,31040059-31040894
          Length = 764

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +1

Query: 289 VTSTFNPIIVPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSSTPIAST 435
           + S  N    P D+F Q Y+ ++  E  V   K+V  E  VS+T  ++T
Sbjct: 255 IDSLLNSFSAPSDAFSQSYEIFQKSESFVGLDKKVKLEESVSATCFSNT 303


>12_02_0900 -
           24153734-24153943,24154461-24155110,24155198-24155334,
           24156595-24157223
          Length = 541

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 283 GLQLLLKLVSRGFLPLTI-TDITTMRIVVILVVLFYGIRPL 164
           G  + +K++SRGFLPL     IT +   + L +  YG+R L
Sbjct: 184 GSAIAIKILSRGFLPLWAGVVITALDCFIFLSLENYGVRKL 224


>11_04_0331 +
           16456577-16456579,16456664-16456911,16457625-16457812,
           16458293-16458489,16458579-16458768,16458865-16459084,
           16459169-16459376,16459508-16459642,16459725-16459916,
           16459999-16460171,16460266-16460454,16460539-16460655,
           16460734-16460818,16460900-16461052,16461135-16461260,
           16461391-16461573,16461823-16461984,16462098-16462214
          Length = 961

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +3

Query: 627 GSVDCQRAGTFPSS*AMVNKFYACK--MGPALSNGFTSTTFSICPDSVSFGP 776
           G V  +R+G FP    +      C   +GP   N +T      CP+  S GP
Sbjct: 360 GGVVTRRSGVFPQLQQVKFDCSKCGTVLGPFFQNSYTEVKVGSCPECQSKGP 411


>02_02_0127 -
           7038149-7038292,7038380-7038697,7038781-7038879,
           7038958-7039050,7039138-7039341,7039435-7039525,
           7039593-7039695,7039761-7039907,7040825-7040876,
           7041003-7041138,7041846-7041911,7041981-7042045
          Length = 505

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 489 IQNCAVNQEVAPSASYTESEAVSGID--SQAFDRYGPGGWRTRTKRLQGSVDCQRAGTFP 662
           ++N   NQE+ P+  Y E + ++  D  +  ++ Y  G    R KR +G       G  P
Sbjct: 122 LENGVQNQELVPNDHYVEEQNITNADWRTNCYEYYPDG----RIKRRRGPTKLANVGNLP 177

Query: 663 SS*AMVNK 686
               ++ K
Sbjct: 178 EGVKIIVK 185


>03_01_0137 -
           1082786-1082846,1083850-1084142,1084250-1084550,
           1084792-1084862,1085008-1085115,1085205-1085279,
           1085298-1085440,1087848-1088097
          Length = 433

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 106 QKGVEVVDFGNNRPLRLSSTNWHRGRSNF 20
           Q       FG ++ L LS+T+W  G++NF
Sbjct: 357 QNNYNTYSFGGSKALVLSTTSWIGGKNNF 385


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,724,501
Number of Sequences: 37544
Number of extensions: 470487
Number of successful extensions: 1377
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)