Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30444
         (855 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical ...    30   2.4  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U13876-5|AAA21176.2|  449|Caenorhabditis elegans Mammalian bysti...    29   5.6  
Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical ...    28   7.4  
AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA s...    28   7.4  
Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr...    28   9.7  

>AF038605-2|AAB92020.1|  698|Caenorhabditis elegans Hypothetical
           protein C02B10.5 protein.
          Length = 698

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 137 QSPVLILKGKRPNSVEQNYENYDNSHRGDIGDSQWQKSSRY 259
           Q+P L++ G R  S E       N H   +G + WQ +  Y
Sbjct: 640 QNPALMVAGNRAGSAEAAAAQMGNPHHPMMGANMWQLTPHY 680


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 316  VPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSS 417
            VPD +F Q   GY N   NV P    Y    ++S
Sbjct: 1195 VPDGNFAQPLTGYTNWAPNVDPTNPAYNHAVINS 1228


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 316  VPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSS 417
            VPD +F Q   GY N   NV P    Y    ++S
Sbjct: 1195 VPDGNFAQPLTGYTNWAPNVDPTNPAYNHAVINS 1228


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 23  VTPSPVPVRRTKPKWPVVTKINDFNP 100
           V PSPVP    KP+  VV+  N  NP
Sbjct: 283 VLPSPVPAPMAKPRESVVSMANSTNP 308


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 316  VPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSS 417
            VPD +F Q   GY N   NV P    Y    ++S
Sbjct: 1195 VPDGNFAQPLTGYTNWAPNVDPTNPAYNHAVINS 1228


>U13876-5|AAA21176.2|  449|Caenorhabditis elegans Mammalian bystin
           (adhesion protein)related protein 1 protein.
          Length = 449

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 322 DDSFYQDYQGYENQEVNVTPKKEVYTERFVSSTPIASTT 438
           DD+  +D  G+E+Q V + P+ E    RF+    I  +T
Sbjct: 108 DDNEEEDDNGFEDQVVELDPRDEADLARFLKKDAIQMST 146


>Z73912-3|CAE18063.1|  828|Caenorhabditis elegans Hypothetical
           protein ZK524.3b protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 289 VTSTFNPIIVPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSSTP 423
           VT    P+IV +D++  D   + N  +    K ++  E+F  + P
Sbjct: 284 VTGRQIPVIVVEDTYQPDVTSFLNSRIGNFQKDKILVEKFAIAEP 328


>Z73912-2|CAA98144.4|  859|Caenorhabditis elegans Hypothetical
           protein ZK524.3a protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 289 VTSTFNPIIVPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSSTP 423
           VT    P+IV +D++  D   + N  +    K ++  E+F  + P
Sbjct: 315 VTGRQIPVIVVEDTYQPDVTSFLNSRIGNFQKDKILVEKFAIAEP 359


>AC024750-1|AAF60437.2|  240|Caenorhabditis elegans Hypothetical
           protein Y17G9A.2 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 757 IQSVLDPKYLGLVNWAQPKAPGLFKAATVF 846
           I + L+PK  G  NWA+   PG F+   VF
Sbjct: 192 ISNDLNPKVRGANNWARYWGPGYFEEIPVF 221


>AB096633-1|BAC76733.1|  828|Caenorhabditis elegans leucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 828

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 289 VTSTFNPIIVPDDSFYQDYQGYENQEVNVTPKKEVYTERFVSSTP 423
           VT    P+IV +D++  D   + N  +    K ++  E+F  + P
Sbjct: 284 VTGRQIPVIVVEDTYQPDVTSFLNSRIGNFQKDKILVEKFAIAEP 328


>Z80221-1|CAB02309.1|  690|Caenorhabditis elegans Hypothetical
           protein ZC247.2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 316 VPDDSFYQDYQGYENQEVNVTPKKEVYTE 402
           VPD S  +++ G +   +N+ PK  V+T+
Sbjct: 57  VPDTSCLEEFDGAKLHRINLGPKSAVFTD 85


>Z78412-8|CAB01653.1|  400|Caenorhabditis elegans Hypothetical
           protein M176.8 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 674 NGKQILRLQDGTCTKQRVHFYHVFNLPGFSQFWTPSIWGLLTGPS 808
           NG+Q   L         V F++V+++  ++  W P+ WG+ TGPS
Sbjct: 191 NGQQFKTLSIMLHLSNHVDFFNVYSMD-YAGPW-PNQWGVPTGPS 233


>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical protein
            W07E11.1 protein.
          Length = 2207

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 11   GLFEVTPSPVPVRRTK---PKWPVVTKIN 88
            G FE+ P P P R+ +   P+WP++ +++
Sbjct: 2013 GAFEILPQPGPNRKPENPWPEWPLIFRVD 2041


>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical protein
            W07E11.1 protein.
          Length = 2207

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +2

Query: 11   GLFEVTPSPVPVRRTK---PKWPVVTKIN 88
            G FE+ P P P R+ +   P+WP++ +++
Sbjct: 2013 GAFEILPQPGPNRKPENPWPEWPLIFRVD 2041


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,526,494
Number of Sequences: 27780
Number of extensions: 420315
Number of successful extensions: 1397
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)