Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30444
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   2.1  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   6.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.3  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 280 LQLLLKLVSRGFLPLTITDITTMRIVVILVVLFYG 176
           L+ L K+    +LPLT+    T+  VVI V  F G
Sbjct: 16  LRYLEKVRGPKYLPLTLIVPITLTYVVIFVTGFVG 50


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 690 YACKMGPALSNGFTSTTFSICPDSVSFGPQVF-GAC 794
           + CK G A+S+       +  PD +  GPQ + G C
Sbjct: 44  HKCKYGIAMSSACGIVQCAKGPDELCGGPQNYLGIC 79


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 675 LLRMTEKSQLFDNRRILVNVSSSFANH 595
           LL  +E+ +LFD  R+ ++   S A H
Sbjct: 70  LLMSSEELRLFDKIRVFLDEDYSSAEH 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,310
Number of Sequences: 438
Number of extensions: 5770
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)