Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30444
(855 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14620.1 68415.m01644 xyloglucan:xyloglucosyl transferase, pu... 31 0.98
At1g72990.1 68414.m08441 glycosyl hydrolase family 35 protein si... 29 5.2
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 28 6.9
At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putati... 28 6.9
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 28 9.1
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 28 9.1
At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to... 28 9.1
At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to... 28 9.1
>At2g14620.1 68415.m01644 xyloglucan:xyloglucosyl transferase,
putative / xyloglucan endotransglycosylase, putative /
endo-xyloglucan transferase, putative similar to
xyloglucan endo-transglycosylase-like protein XET-1
GI:5070246 from [Medicago truncatula]
Length = 299
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Frame = +2
Query: 536 YRIRSCFWNRFSSF---RSLRPWWLANEDETFTRIRRLSKSW 652
Y+I +C W +SF S WW NE + TR+++ W
Sbjct: 228 YKIDACIWIGNTSFCNGESTENWWNKNEFSSLTRVQKRWFKW 269
>At1g72990.1 68414.m08441 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:2289790 from [Bacillus
circulans]; contains Pfam profile PF01301: Glycosyl
hydrolases family 35
Length = 697
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = -1
Query: 123 APSLRTKRGLKSLIL-VTTGHFGLVRRTGTGDGVTSNKPCSM 1
+PS + ++ S+ + +TT F LVR T D +TS P SM
Sbjct: 404 SPSNKQRKAYGSIKMQMTTSLFDLVRMTDPADVITSANPISM 445
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 509 PRSSTVSFVYRIRSCFW 559
PR TV F+YR R CF+
Sbjct: 556 PRKRTVGFLYRCRKCFY 572
>At1g70920.1 68414.m08183 homeobox-leucine zipper protein, putative
/ HD-ZIP transcription factor, putative similar to
homeodomain leucine zipper protein GI:5006851 from
[Oryza sativa]
Length = 206
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +1
Query: 340 DYQGYENQEVNVTPKKEVYTERFVSSTPIASTTEKYRTRSRVKAVTVAPTYKTVLLTKK* 519
D+ G + ++N TPK E E + +TP + + R K + + +L
Sbjct: 27 DHHGMRDFDINQTPKTEEDREWMIGATPHVNEDDSNSGGRRRKKLRLTKEQSHLLEESFI 86
Query: 520 HRQLRIQNQKLFLESILKLS 579
QK L + LKLS
Sbjct: 87 QNHTLTPKQKKDLATFLKLS 106
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 417 HSDCFNDREI*NKVQSESCDCRSDIQNCAVNQEVAPSASYTESEA 551
H D ND+ I VQ S D + D + C + +P+ + ++
Sbjct: 351 HPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDS 395
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 417 HSDCFNDREI*NKVQSESCDCRSDIQNCAVNQEVAPSASYTESEA 551
H D ND+ I VQ S D + D + C + +P+ + ++
Sbjct: 612 HPDSLNDKTISENVQESSKDAKVDSEACQNHPTASPATVVPDQDS 656
>At1g01070.2 68414.m00008 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 318
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -3
Query: 550 ASDSVYEADGATSWLTAQFCMSERQSQLSLWTLFYISLSLK---QSECSIRISLYKLLS* 380
AS + + D A +WL ++ LSLW LF +LS+K + + +S++
Sbjct: 129 ASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQC 188
Query: 379 ALRSLPDSHTLDN 341
AL SL S +++
Sbjct: 189 ALLSLYKSRDVND 201
>At1g01070.1 68414.m00009 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -3
Query: 550 ASDSVYEADGATSWLTAQFCMSERQSQLSLWTLFYISLSLK---QSECSIRISLYKLLS* 380
AS + + D A +WL ++ LSLW LF +LS+K + + +S++
Sbjct: 176 ASHNNNDQDKANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQC 235
Query: 379 ALRSLPDSHTLDN 341
AL SL S +++
Sbjct: 236 ALLSLYKSRDVND 248
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,502,248
Number of Sequences: 28952
Number of extensions: 389159
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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