Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30442
         (876 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   1.0  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.4  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   3.1  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   3.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   5.5  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   7.3  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 821 LDGGQALQAPGGGTSAPGVRPETP 750
           +DG Q    P  GT++P   PE P
Sbjct: 64  VDGWQVTPLPSDGTTSPEPDPEIP 87


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 261 FELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 377
           +   G+  A   V  I+   D+D NG  N + ++K+  K
Sbjct: 56  YSFIGVNDADWSVLVIDPELDVDQNGFRNFTNLKKTHPK 94


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 676 ELEGIYNSDNYEDVPGC 726
           + +G  N ++ EDVPGC
Sbjct: 204 DADGTGNCEDPEDVPGC 220


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 676 ELEGIYNSDNYEDVPGC 726
           + +G  N ++ EDVPGC
Sbjct: 204 DADGTGNCEDPEDVPGC 220


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 255 QQVVIFGHSTLTLKYLDEYSGLV 187
           QQV  F HS  ++ +L E  GLV
Sbjct: 367 QQVKNFRHSVRSVFFLSEIFGLV 389


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 527 SMKSTMEDEKLKEKISDSD 583
           S+ S  EDE+++ ++SD D
Sbjct: 18  SLLSKKEDEEVEHRLSDRD 36


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,848
Number of Sequences: 336
Number of extensions: 3951
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24203322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)