Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30441
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    31   0.25 
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    28   1.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    27   4.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   7.2  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.6  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 24/95 (25%), Positives = 39/95 (41%)
 Frame = -2

Query: 606 TSSVRLHFRYAFQFNVKNL*NSMTRTHARLLGPVSRRVLRVPETVSSQTFKQTRTSPRLH 427
           T S  LHFRY   +N +   N     + + L     + + V +TV ++  K    +P  H
Sbjct: 227 TLSAGLHFRYGASYN-EFCVNHSPEHYLQKLSAARAQFMEVYDTVKAEVEKM--VTPEQH 283

Query: 426 GCDNRRVALASALRQETRKYDVDLRRAGRV*ENFF 322
              N  V L S +   T  Y ++    G   +N +
Sbjct: 284 HLINNVVRLVSRMPDATNSYAMNNMLPGTAFKNLW 318


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 227 NSYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHE 93
           N +G   D +K  ++   C T+   H+  G  +    +D E THE
Sbjct: 219 NKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHENTHE 263


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 581 RK*RRTLDVRSGRMKLSSYVRDFR--TPEASRFQSVNERRALSTN 709
           RK RRT D + G +  ++   DFR   P+  R + +N ++  + N
Sbjct: 114 RKVRRTYDTKDGFVAWNTLDDDFRPIVPDQERSRKINPQKGNNNN 158


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -3

Query: 107 ERTHETNVPSTSERT*TYAREKTMNLSVR 21
           ER  E+++P+ +++   Y ++KT NLS++
Sbjct: 470 ERIIESDLPNNNKQKDRYFKDKTSNLSMK 498


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +2

Query: 335 HTRPARRKSTSYFLVSCLSADASATRLLSQPCSLGLVRVCLNVC-DDTVSGTRRTRLETG 511
           HT P + K+   FL SC++      R +S+      + VC++     +V+  ++T  E  
Sbjct: 555 HTSPTQHKAVLEFLNSCIN------RCISR--VFAYLDVCVDCFKKHSVNSQKKTAPEVS 606

Query: 512 PRSLACVRVIEFY 550
           P S+  +  I F+
Sbjct: 607 PISVTLIEQIPFF 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,740
Number of Sequences: 5004
Number of extensions: 60575
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)