Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30441
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.63
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41) 31 0.83
SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 29 3.4
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15) 29 3.4
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014) 29 5.9
SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88) 28 7.7
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 28 7.7
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -1
Query: 784 NRYGPQSVSP-DFD*PGIVHHLSGPSICAQSAPFI 683
NRY P P GIVHHLSGP+ CA + F+
Sbjct: 1 NRYEPPPEFPLASPYSGIVHHLSGPNRCALTQTFL 35
>SB_6619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 942
Score = 31.9 bits (69), Expect = 0.63
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Frame = -1
Query: 223 RTVSRAIVLNPRRTGRDALLREKCTSSRDVKRSRT----VPTENERTKRTFRQHLNARKR 56
R+ SR+ LN +R+ R R + ++SRD KRSR+ P ER K +H +R +
Sbjct: 237 RSRSRSATLNQKRS-RSKHSRSR-SNSRDQKRSRSRRSHTPPSEERPKSRLYRH--SRSK 292
Query: 55 TPERKR*ISP 26
+ ERK SP
Sbjct: 293 SKERKTLKSP 302
>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
Length = 686
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 471 SSQTFKQTRTSPRLHGCDNRRVALASALRQETRKYDVDLRR 349
+S + T+ SP + R LA LRQ T Y+ +LRR
Sbjct: 474 TSPQYTLTKVSPEMEALVRERNDLARELRQRTEAYEAELRR 514
>SB_766| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1704
Score = 30.3 bits (65), Expect = 1.9
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = -3
Query: 461 RSNKHALVRDCTAATTDASHSRPH*GRKRENTTLTCVGPDAYEKIFFRNFQRVRD*FNDT 282
R+N H + RD T D SH G R+N+ + G +++E I N +R+ +
Sbjct: 1593 RNNSHGITRDNNVLTRDNSH-----GITRDNSHVLTRG-NSHE-ITRDNSHGIRNNSHGI 1645
Query: 281 VRMRGSERYR-SERVLNE*NSYGLPRDRLKSTTNGSRCITKREVHVFS 141
R + R + + NS+G+ RD T + S IT HV +
Sbjct: 1646 TRDNSNVLTRDNSHGITRDNSHGITRDNNVLTRDNSHGITWDNSHVLT 1693
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -1
Query: 235 TNKTRTVSRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKR 56
+ K R SR+ L+ RR + K S RD RSR + ++ R +++ +R R
Sbjct: 272 SRKHRHRSRSSSLSSRRRSK-----HKRKSKRDRSRSRDRSSSKSKSLRRSKKYSRSRSR 326
Query: 55 TPERKR 38
+ ER+R
Sbjct: 327 SSERRR 332
>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
Length = 884
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 274 CVDRNDTGPNVF*TNKTRTVSRAIVLNPRRTGRDAL--LREKCTSSRDVKRSRTVPTENE 101
C++ + + P + + V + L P T D L L EK TS RD RSR +E
Sbjct: 175 CLEPHPSAPVLATSGLDHDVKIWVPLEPSPTVLDGLDKLMEKNTSDRDDDRSRPHDPISE 234
Query: 100 RTKRTFRQHLNARKRT 53
H+ R+R+
Sbjct: 235 HLLYLMMHHMQRRRRS 250
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 785 ESLRSSISFP*-LRLTRHSSPSFGSQHLCS 699
ESLR+S L RHSSPSFGSQ + S
Sbjct: 35 ESLRASTRVSSGFTLFRHSSPSFGSQQMRS 64
>SB_5204| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.014)
Length = 351
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 163 REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPER 44
R +C +R +KR R + T + T + FR+ L+ ++ ER
Sbjct: 11 RLRCKITRAIKRIRNLTTTDTTTAKRFRKELDQLRKDFER 50
>SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
Length = 490
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 537 TRTHARL---LGPVSRRVLRVPETVSSQTFKQTRTSPRLHGCDNRRVALASALRQETRKY 367
TR HA++ + +R+ ++P + T K + R+H + + + + + TRKY
Sbjct: 296 TRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKHAKIPTRIHRYTRKDAKIPTRIHRYTRKY 355
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 130 RSRTVPTENERTKRTFRQHLNARKRTPERKR 38
+SRT P R++ ++H ++ RTP R R
Sbjct: 67 KSRTPPRHRRRSRSPNKKHSRSKSRTPPRHR 97
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,797,606
Number of Sequences: 59808
Number of extensions: 490973
Number of successful extensions: 1823
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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