Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30441
(808 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 30 1.7
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 30 1.7
AF040646-4|AAO38629.1| 395|Caenorhabditis elegans Hypothetical ... 30 2.2
AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical ... 30 2.2
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 29 5.2
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 28 9.0
AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative telo... 28 9.0
AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein. 28 9.0
AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock (biolog... 28 9.0
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 190 RRTGRDALL-REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 26
RR +D+ R + R RSR+V +N + ++ N R+R+P R R SP
Sbjct: 1118 RRPNKDSYRDRRRFNGRRSRSRSRSVSPQNYKRRKLDEHDNNHRQRSPIRDRHTSP 1173
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 190 RRTGRDALL-REKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR*ISP 26
RR +D+ R + R RSR+V +N + ++ N R+R+P R R SP
Sbjct: 1132 RRPNKDSYRDRRRFNGRRSRSRSRSVSPQNYKRRKLDEHDNNHRQRSPIRDRHTSP 1187
>AF040646-4|AAO38629.1| 395|Caenorhabditis elegans Hypothetical
protein H17B01.4b protein.
Length = 395
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 266 SERYRSERVLNE*N---SYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTH 96
SE RS RV N+ N ++ LP KS +T + +HV SGR +R E+
Sbjct: 99 SEDGRSVRVWNKNNGVLAHQLPISEQKSEIQAIH-VTNQRLHVASGRTLVVFRLGDEKPV 157
Query: 95 ETNVPST 75
ET + T
Sbjct: 158 ETVISKT 164
>AF040646-3|AAK31541.1| 946|Caenorhabditis elegans Hypothetical
protein H17B01.4a protein.
Length = 946
Score = 29.9 bits (64), Expect = 2.2
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -3
Query: 266 SERYRSERVLNE*N---SYGLPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTH 96
SE RS RV N+ N ++ LP KS +T + +HV SGR +R E+
Sbjct: 99 SEDGRSVRVWNKNNGVLAHQLPISEQKSEIQAIH-VTNQRLHVASGRTLVVFRLGDEKPV 157
Query: 95 ETNVPST 75
ET + T
Sbjct: 158 ETVISKT 164
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 250 PNVF*TNKTRTVSRAIVLNPRRTG-RDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 74
P+ T+KT T R V P T R + KCT ++V + +PT T +F H
Sbjct: 293 PDANETSKTPTAIR--VRRPSPTNLRSVSFQNKCTVLKNVPMPQVLPT----TSSSFDHH 346
Query: 73 LNARKRTPER 44
TP+R
Sbjct: 347 PQYHSNTPDR 356
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 214 SRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 38
SR PR R ++ R+ R+ +R R E+ R +R + R+R+PER+R
Sbjct: 260 SRKDQRKPREDRRRSVERQ---DQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRR 315
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = -1
Query: 232 NKTRTVSRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRT 53
+ +R+ SR+ + RR+ + R K S KRSR R++ R N + R+
Sbjct: 210 SNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRS 269
Query: 52 PER 44
P R
Sbjct: 270 PSR 272
>AJ320257-1|CAC44622.1| 877|Caenorhabditis elegans putative
telomere binding protein protein.
Length = 877
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 102 SFSVGTVRERLTSREDVHFSLSNASRPVRRGFKTIARET-VRVLFV*NTFGPVSFRSTHS 278
+F + +E+ E F+++N GF IA + +R+L + N FG F+ T
Sbjct: 544 AFEMLLEKEKYEVFEAAFFNITNLINRRPIGFPQIAEKLFIRILHLQNNFGTPKFKETVD 603
Query: 279 DGIIKLITHALKI 317
+ + IT +I
Sbjct: 604 EIAVACITQRPEI 616
>AF400665-1|AAL28024.1| 877|Caenorhabditis elegans CLK-2 protein.
Length = 877
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 102 SFSVGTVRERLTSREDVHFSLSNASRPVRRGFKTIARET-VRVLFV*NTFGPVSFRSTHS 278
+F + +E+ E F+++N GF IA + +R+L + N FG F+ T
Sbjct: 544 AFEMLLEKEKYEVFEAAFFNITNLINRRPIGFPQIAEKLFIRILHLQNNFGTPKFKETVD 603
Query: 279 DGIIKLITHALKI 317
+ + IT +I
Sbjct: 604 EIAVACITQRPEI 616
>AC006605-5|AAK85444.3| 877|Caenorhabditis elegans Clock
(biological timing) abnormalityprotein 2 protein.
Length = 877
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 102 SFSVGTVRERLTSREDVHFSLSNASRPVRRGFKTIARET-VRVLFV*NTFGPVSFRSTHS 278
+F + +E+ E F+++N GF IA + +R+L + N FG F+ T
Sbjct: 544 AFEMLLEKEKYEVFEAAFFNITNLINRRPIGFPQIAEKLFIRILHLQNNFGTPKFKETVD 603
Query: 279 DGIIKLITHALKI 317
+ + IT +I
Sbjct: 604 EIAVACITQRPEI 616
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,152
Number of Sequences: 27780
Number of extensions: 345957
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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