Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30441
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23430.1 68417.m03377 short-chain dehydrogenase/reductase (SD...    29   2.7  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    29   4.8  
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa...    29   4.8  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   4.8  
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-...    28   6.3  
At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    28   6.3  
At4g23430.2 68417.m03378 short-chain dehydrogenase/reductase (SD...    28   8.4  
At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family...    28   8.4  

>At4g23430.1 68417.m03377 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily;
           contains Pfam PF00106: oxidoreductase, short chain
           dehydrogenase/reductase family
          Length = 320

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +2

Query: 608 RSGRM-KLSSYVRDFRTPEASRFQSVNERRALSTNAGTRKMVNYAWSVEVRGN*LRTVAI 784
           R GR+  LSS    F  PE  RF  +N++ +     G  K+ N   + E+          
Sbjct: 161 REGRIVNLSSEAHRFSYPEGVRFDKINDKSSSMRAYGQSKLCNVLHANELTKQLKEDGVN 220

Query: 785 LTCKSIRP 808
           +T  S+ P
Sbjct: 221 ITANSLHP 228


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 169 LLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 38
           +LREK    RD+++ R    EN+  K   R+H   R R  E+ R
Sbjct: 97  MLREKKRKERDMEKERDRSKEND--KGVEREHEGDRNRAKEKDR 138


>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 545

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 81  RNVRFVRSFSVGTVRERLTSREDV 152
           RNVRF R+ SVG +R+R+  R  +
Sbjct: 261 RNVRFSRTLSVGRLRDRVLRRSSL 284


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 190 RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 38
           R+   +A  RE+     + +  R    E E T+R  R+   ARKR  ERKR
Sbjct: 447 RKEEEEARKREEAKRREEEEAKRR---EEEETERKKREEEEARKREEERKR 494


>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
           domain-containing protein contains Pfam profile PF00627:
           UBA/TS-N domain
          Length = 649

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 746 LTRHSSPSFGSQHLCSERAFHSLIG 672
           L +HS+P   S HL SE  FH  +G
Sbjct: 206 LMQHSAPPLPSLHLPSESQFHDSVG 230


>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P46825 Kinesin light chain
           (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
           TPR Domain
          Length = 1797

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 680 VNERRALSTNAGTRKMVNYAWSVEVRGN*LR-TVAILTCK 796
           ++ RR LS N  T  + NY+ S E+RG+ L+ TV +   K
Sbjct: 49  IDVRRLLSVNFDTCHVTNYSLSHEIRGSRLKDTVDVSALK 88


>At4g23430.2 68417.m03378 short-chain dehydrogenase/reductase (SDR)
           family protein contains INTERPRO family IPR002198
           Short-chain dehydrogenase/reductase (SDR) superfamily;
           contains Pfam PF00106: oxidoreductase, short chain
           dehydrogenase/reductase family
          Length = 322

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 608 RSGRM-KLSSYVRDFRTPEASRFQSVNERRALSTNA--GTRKMVNYAWSVEVRGN*LRTV 778
           R GR+  LSS    F  PE  RF  +N++ + S+    G  K+ N   + E+        
Sbjct: 161 REGRIVNLSSEAHRFSYPEGVRFDKINDKSSYSSMRAYGQSKLCNVLHANELTKQLKEDG 220

Query: 779 AILTCKSIRP 808
             +T  S+ P
Sbjct: 221 VNITANSLHP 230


>At1g63540.1 68414.m07183 hydroxyproline-rich glycoprotein family
           protein
          Length = 635

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 731 SPSFGSQHLCSERAFHSLIGN 669
           SPSFG  H C + AF S  GN
Sbjct: 259 SPSFGPAHNCGKPAFGSPFGN 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,077,149
Number of Sequences: 28952
Number of extensions: 314180
Number of successful extensions: 803
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)