Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30438
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 31 1.2
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 31 1.2
05_04_0274 - 19636163-19636280,19636359-19636423,19636485-196366... 30 2.1
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 2.7
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 29 4.8
01_06_1533 + 38041499-38041681,38041853-38041985,38042816-380429... 29 4.8
03_02_0015 + 4965894-4966214,4966339-4966387,4966504-4966890,496... 29 6.3
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 28 8.4
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875... 28 8.4
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 31.1 bits (67), Expect = 1.2
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +1
Query: 397 TSLAPREGQCCPDTYICEGDELSTEVNDF 483
TSL+P E C D +CEG EL+TE F
Sbjct: 303 TSLSPEE--TCEDDVVCEGTELATEKQYF 329
>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 31.1 bits (67), Expect = 1.2
Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +1
Query: 277 VDGALIKTEKACEHCYCMKGDIVCVVQECGTPMENEGKNCTSLA-PREGQCCPDTYICEG 453
+ + +++ + +H + I + TP+EN G++C P E + G
Sbjct: 1018 LSASFLESSASMQHLSQIDKSIAAQTSDKSTPLENLGEDCREREFPEENSTALEQGQAIG 1077
Query: 454 DELSTEVNDFTTEPISEDLQHYHLEELVPRAVDIEKKLTISHTLNFLR 597
++ + D ++ +D +++HL+ I K T + TLNF++
Sbjct: 1078 SKMEGDDKDKQSKLNVKDQKYFHLDSY------IVPKFTENTTLNFVQ 1119
>05_04_0274 -
19636163-19636280,19636359-19636423,19636485-19636637,
19636738-19637043,19637137-19637314,19637452-19637687,
19637835-19638032,19638171-19638293,19638729-19639013,
19639186-19639326,19639799-19640188,19640465-19640647,
19640934-19641020
Length = 820
Score = 30.3 bits (65), Expect = 2.1
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +2
Query: 119 PVRY---SCDHPEDEIPLLDDMSTTVRP--TPGFLLTTTTIAPVT-QASQSLS 259
P RY S DHPED PL ++ +VR PG +T T P+T A+ SLS
Sbjct: 546 PRRYAPESLDHPEDRQPLALEVWQSVRKQLDPGEKITVLTNGPLTNMANISLS 598
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 2.7
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 561 ETDNFPY--TELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVTENVEIKQ 734
E ++ P+ T S E + + L E + EE+ + T + DK+ + E EIK
Sbjct: 1379 EIESVPHESTTTSVKELNEDVKSNVALAEEAASEEHILETEVTV-DKSSAQEPELEEIKN 1437
Query: 735 TTPVPKEYHTLPDSNILEK 791
T P +E H + ++ + E+
Sbjct: 1438 TEPAEQE-HNITETGLPEE 1455
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 513 TLPSRRVSAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTE 683
TLP V E S K +DN + + T + DT E E +M+ S+E
Sbjct: 98 TLPPHEVPVENSSSEKSSDNSVAEVVPEKDAETPAAQDTTSVVEDKSETPEMTASSE 154
>01_06_1533 +
38041499-38041681,38041853-38041985,38042816-38042954,
38043331-38043367,38045606-38045897,38046384-38046502
Length = 300
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/74 (27%), Positives = 28/74 (37%)
Frame = +2
Query: 53 VMQECTLHVDGCTPIYHKDVCCPVRYSCDHPEDEIPLLDDMSTTVRPTPGFLLTTTTIAP 232
+ Q HV G +P Y D P Y + + P + G + ++ P
Sbjct: 142 IPQGLPYHVYGYSP-YSPDYSYPTNYYNIYGGAQYPFYGAAAAAAAAAAGMVTGSSPFYP 200
Query: 233 VTQASQSLSTTTRY 274
Q QS STTT Y
Sbjct: 201 YFQFGQSGSTTTNY 214
>03_02_0015 +
4965894-4966214,4966339-4966387,4966504-4966890,
4966976-4967034,4967128-4967241,4967344-4967460,
4967558-4967684,4967764-4968050,4968148-4968338,
4968801-4968886,4968975-4969051,4969161-4969304
Length = 652
Score = 28.7 bits (61), Expect = 6.3
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 399 STVFTFVLHWRTTFLNYTDNISFHTITMFTSFFCFD*SSVHKYLV-VVDKLCDA*VTGAI 223
STV L W T YT N + +I + FD S YL+ VDKL GA
Sbjct: 415 STVVLLALLWITPLFKYTPNATISSIIISAVLGLFDFESA--YLIWKVDKLDFMACLGAF 472
Query: 222 VVVVNRKPGVGLTV 181
+ V+ GL +
Sbjct: 473 LGVIFSSVEYGLLI 486
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 28.3 bits (60), Expect = 8.4
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +2
Query: 119 PVRYSCDHPEDEIPLLDDMSTTVRPT--PGFLLTTTTIAPVTQASQSLSTTTRYLWTEL* 292
PVR S HP D +P D M + PT P V S ++TT + W++L
Sbjct: 80 PVRSSVLHPTDSMP-TDAMPLLLTPTLGPPIDAPQPETTAVVHESAGEASTTSFDWSKLT 138
Query: 293 SKQKKLVNIV 322
+ V ++
Sbjct: 139 EMGYRAVEVI 148
>03_06_0581 +
34886728-34886817,34886990-34887175,34887332-34887543,
34888161-34888318,34888615-34888773,34888921-34888973,
34889265-34889405,34889788-34889823,34890542-34890776,
34891017-34891144
Length = 465
Score = 28.3 bits (60), Expect = 8.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 92 PIYHKDVCCPVRYSCDHPEDEIPLLDDMSTTVRPTPGFLLTTTTIAPVTQASQS 253
PIY + C VRY+ + P ++ ST+ PT ++ +AP+TQ S
Sbjct: 164 PIYAGNALCTVRYTGEDP----CMMSIRSTSFSPTEA--MSEAKVAPITQVDLS 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,873,476
Number of Sequences: 37544
Number of extensions: 519266
Number of successful extensions: 1368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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