Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30438
(864 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028) 32 0.52
SB_42297| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.69
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012) 30 2.1
SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45) 30 2.8
SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16) 29 3.7
SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6) 29 3.7
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17) 29 3.7
SB_53056| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34) 29 6.5
SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 28 8.5
SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094) 28 8.5
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 39.9 bits (89), Expect = 0.003
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +2
Query: 2 PNKP-CEHCYCIRNMTTCVMQECTLHVDGCTPIYHKDVCCPV--RYSCDHPEDEIPLLDD 172
PN+ C C CI+ C EC+ PI CCP+ S H ED PL D
Sbjct: 231 PNEDTCFQCRCIKGFAQCTRTECSRDCPNPEPI--PGQCCPICTIISILHTEDHEPLSDS 288
Query: 173 MSTTVR 190
+ TVR
Sbjct: 289 STCTVR 294
Score = 34.3 bits (75), Expect = 0.13
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 301 EKACEHCYCMKGDIVCVVQECGTPMENEGKNCTSLAPREGQCCP 432
E C C C+KG C EC ++C + P GQCCP
Sbjct: 233 EDTCFQCRCIKGFAQCTRTEC-------SRDCPNPEPIPGQCCP 269
>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
Length = 3809
Score = 32.3 bits (70), Expect = 0.52
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 561 ETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVTE-----NVE 725
ET+ P T++ P EF TE T + E E M+ E I+ P+T+ E
Sbjct: 1798 ETEVKPMTQI-PEEFETEVKPTTQIPEEIETEVKPMTQIPEEIETEVKPMTQIPEEIETE 1856
Query: 726 IKQTTPVPKEYHT 764
+K T +P+E T
Sbjct: 1857 VKPMTQIPEEIET 1869
Score = 29.5 bits (63), Expect = 3.7
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Frame = +3
Query: 582 TELSPLEFVTEGSGD-----THLTTEKSQEEYQMSTSTEIIDKTKSPVTE-----NVEIK 731
TE+ PL + E +G T + E E M+ E I+ P+T+ E+K
Sbjct: 1757 TEVKPLSQILEENGPEVEPVTQIPKESEPEVKPMTQIPEEIETEVKPMTQIPEEFETEVK 1816
Query: 732 QTTPVPKEYHT 764
TT +P+E T
Sbjct: 1817 PTTQIPEEIET 1827
Score = 29.1 bits (62), Expect = 4.9
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Frame = +3
Query: 561 ETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVTE-----NVE 725
ET+ P T++ P E TE T + E E M+ E I+ P+T+ E
Sbjct: 1812 ETEVKPTTQI-PEEIETEVKPMTQIPEEIETEVKPMTQIPEEIETEVKPMTQIPEEIETE 1870
Query: 726 IKQTTPVPKEYHT--LPDSNILEKTTIGNVEPIDAINVSLDLMEPVPV 863
+K T +P+E T P + I E+ V+P+ I ++ ME P+
Sbjct: 1871 VKLVTQIPEEIETEVKPMTQIPEEIET-EVKPMTQIPEEIE-MEVKPM 1916
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Frame = +3
Query: 561 ETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVTE-----NVE 725
ET+ P T++ P E TE T + E E M+ E I+ P+T+ +E
Sbjct: 1854 ETEVKPMTQI-PEEIETEVKLVTQIPEEIETEVKPMTQIPEEIETEVKPMTQIPEEIEME 1912
Query: 726 IKQTTPVPKEYHT 764
+K T +P+E T
Sbjct: 1913 VKPMTQIPEEIET 1925
Score = 28.7 bits (61), Expect = 6.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +3
Query: 561 ETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVTE-----NVE 725
ET+ P T++ P E TE T + E E M E I+ P+T+ E
Sbjct: 1924 ETEVKPMTQI-PEEIETEVKPMTQIPEEIETEVKPMKQIPEEIETEVKPMTQIPEEIETE 1982
Query: 726 IKQTTPVPKEYHT 764
+K T +P+E T
Sbjct: 1983 VKPMTQIPEEIET 1995
>SB_42297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 31.9 bits (69), Expect = 0.69
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 421 QCCPDTYICEGDELSTEVNDFTTEPISEDLQHYHLEELVPRAVDIEKKL 567
Q ++ E DE T++ + T I Q+Y LEE + R+V +K L
Sbjct: 16 QVAASSFRNESDESRTDLCNLMTHKIQTQKQYYVLEEKIERSVSAQKSL 64
>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 31.5 bits (68), Expect = 0.92
Identities = 19/58 (32%), Positives = 23/58 (39%)
Frame = +1
Query: 259 HDDKIFVDGALIKTEKACEHCYCMKGDIVCVVQECGTPMENEGKNCTSLAPREGQCCP 432
H K + + A K C C C+ G CV C P NC +GQCCP
Sbjct: 255 HGQKFYGERAEWKPND-CTVCTCILGRPECVATVCRHP------NCVDAVRIKGQCCP 305
>SB_5453| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2578
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 5 NKPCEHCYCIRNMTTCVMQECTLHVDGCTPIYHKDVCCPVRYSCDHPEDEIPLLD-DMST 181
+ P EH ++N+ +++D C +Y KD CP + H E P+ D DMS
Sbjct: 2358 DSPEEHT-SVQNVQNLFSNTHAVNLDNCFELYTKDETCPSGRTKLHTLVEFPVNDLDMSP 2416
Query: 182 TVRP 193
+ P
Sbjct: 2417 HLEP 2420
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 31.1 bits (67), Expect = 1.2
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Frame = +3
Query: 510 TTLPSRRVSAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEII 689
T LP V+ E + ET P T LSP E L T + E +TE
Sbjct: 2802 TALPESTVAPETT-MAPETTVEPETTLSP-ETTVAPETTVALGTTVTPETTVAPETTEEP 2859
Query: 690 DKTKSPVTENVE---IKQTTPVPKEYHTLPDSNILEKTTI 800
+ T P T V I Q T V E LP+S + TT+
Sbjct: 2860 ETTVVPETTAVPETTITQETTVAPETTALPESTVASMTTV 2899
Score = 30.7 bits (66), Expect = 1.6
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Frame = +3
Query: 510 TTLPSRRVSAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKS-QEEYQMSTSTEI 686
TT+P + ET P T ++P T DT LT + + E M+ T +
Sbjct: 3635 TTVPPETTETPETTVVSETTVTPETTVAP---ETTAEPDTTLTPDTTVAPETPMAPETTV 3691
Query: 687 IDKTK-SPVTENVE---IKQTTPVPKEYHTLPDSNILEKTTI 800
+T +P T V + Q T V E LP+S + TT+
Sbjct: 3692 APETTVTPETTAVPEATVTQETTVAPETTALPESTVAPMTTV 3733
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 220 NDRTCYSGVTKLVHDDKIFVDGALIKTEKAC---EHCYCMKGDIVCVVQECGTPMENEGK 390
ND +C + L DK G+ ++ K+ ++ C KG VC V EC +
Sbjct: 494 NDISCRNKTDCL---DKAMCSGSSVECPKSVYQPDNTVCDKGRRVCSVGECAKSI----- 545
Query: 391 NCTSLAPREGQCCPDTYIC 447
CT A E QC D +C
Sbjct: 546 -CTKYALEECQCTADNDLC 563
>SB_59145| Best HMM Match : Keratin_B2 (HMM E-Value=0.0012)
Length = 489
Score = 30.3 bits (65), Expect = 2.1
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = +1
Query: 214 HDNDRTCYSGVTKLVHDDKIFVDGALIKTEKACEHCYCM----KGDIVCVVQEC-GTP-- 372
H D+ CY G + + K + +L K + CE C K D+ CV Q+C G
Sbjct: 385 HSCDQLCYEGSCRSM---KCY---SLNKCNQVCEDGRCQLMLCKSDL-CV-QDCRGADCF 436
Query: 373 MENEGKNCTSLAPREG 420
ME +NCT L PR G
Sbjct: 437 MECRARNCTQLCPRGG 452
>SB_8084| Best HMM Match : EGF_CA (HMM E-Value=2.8026e-45)
Length = 3094
Score = 29.9 bits (64), Expect = 2.8
Identities = 24/96 (25%), Positives = 39/96 (40%)
Frame = +3
Query: 510 TTLPSRRVSAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEII 689
TTL SA + ET + P T L+P T + +T + E + + + EI
Sbjct: 1574 TTLAPETTSAPETTVAPETTDAPATTLAP---ETTAALETTVAPETTAAP-ETTVPPEIT 1629
Query: 690 DKTKSPVTENVEIKQTTPVPKEYHTLPDSNILEKTT 797
T++ + T P E PD+ + +TT
Sbjct: 1630 AATETTAAPETTVGPETTAPPETTAAPDTTVAGETT 1665
Score = 29.5 bits (63), Expect = 3.7
Identities = 23/103 (22%), Positives = 42/103 (40%)
Frame = +3
Query: 492 TNIRRFTTLPSRRVSAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMS 671
T + + TTL +A + ET + P T L+P T + +T + E + + +
Sbjct: 1800 TTVSQETTLAPETTAAPETTVAPETTDAPATTLAP---ETTAALETTVAPETTAAP-ETT 1855
Query: 672 TSTEIIDKTKSPVTENVEIKQTTPVPKEYHTLPDSNILEKTTI 800
+ EI T++ + T P E P++ TT+
Sbjct: 1856 VAPEITAATETTAAPETTVVHETTAPPETTVAPETTAAPDTTV 1898
>SB_56860| Best HMM Match : Cadherin (HMM E-Value=4.4e-16)
Length = 748
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 506 SSDIGSVVKS-LTSVLN--SSPSQIYVSGQH*PSRGANEVQFLPSFSIGVPHS*TTQTIS 336
+S G V KS L S++N +PS + ++G H A + SF + P + TQT S
Sbjct: 522 NSSTGPVFKSFLISIINVNEAPSDVQLTGSHSVGENAMAGTIIGSFMVTDPDNKVTQTQS 581
Query: 335 PF 330
+
Sbjct: 582 HY 583
>SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6)
Length = 187
Score = 29.5 bits (63), Expect = 3.7
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +2
Query: 26 YCIRNMTTCV-MQECTLHVDGCTPIYHKDVCCPVRYSCDHPEDEIPLLDDMSTTVRPTPG 202
YC T+C C L V C I + C PV +C+ + T P
Sbjct: 107 YCTSTPTSCTPTTTCYLQVPTCILIPPVNPCTPVTTTCE------KTISVTKTQTLPPDT 160
Query: 203 FLLTTTTIAPVTQASQSLSTT 265
LTTT+++ T ++TT
Sbjct: 161 CTLTTTSMSTCTVPGPCVTTT 181
>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
Length = 1038
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +2
Query: 23 CYCIRNMTTCV--MQECTLHVDGCTPIYHKDVCCPVRYSC-DH 142
C C+ N+ TCV + CT H+ CT H +C + C DH
Sbjct: 830 CTCVPNICTCVPNICTCTEHMHICTE--HMHMCTEHMHMCTDH 870
>SB_53056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 29.1 bits (62), Expect = 4.9
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 370 PMENEGKNCTSLAPREGQCCPDTYICEGDELSTEVNDFTTEPISEDLQHYHLEELVPRAV 549
P+E G N + L + Q P +C+ E+S + P+ E + + LEEL + +
Sbjct: 29 PLECFGSNSSFLTDKATQ--PSKQVCKPSEVSAQSPMQVVAPLQESMHNNSLEELYKKYI 86
>SB_33579| Best HMM Match : Laminin_G_2 (HMM E-Value=3.2e-34)
Length = 1071
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +1
Query: 370 PMENEGKNCTSLAPREGQCCPDTYICEGDELSTEVNDFTTEPISEDLQHYHLEELVPRAV 549
P+E G N + L + Q P +C+ E+S + P+ E + + LEEL + +
Sbjct: 611 PLECFGSNSSFLTDKATQ--PSKQVCKPSEVSAQNPMQVVAPLQESMHNNSLEELYKKYI 668
>SB_3052| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1124
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/47 (31%), Positives = 19/47 (40%)
Frame = +3
Query: 606 VTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVTENVEIKQTTPV 746
V G G HL T K + + I D+TK IK T P+
Sbjct: 107 VVNGFGTLHLDTSKQDTDVEDLEEQVIDDQTKQQAARIQSIKNTNPL 153
>SB_8491| Best HMM Match : LicD (HMM E-Value=0.0094)
Length = 289
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 382 EGKNCTSLAPREGQCCPDTYICEGDELSTEVNDFTTEPISEDLQHYH 522
+GK+ SL+ G+ CP +Y+ G + N F I Q+ H
Sbjct: 64 DGKSFCSLSFDYGEMCPTSYVELGGKCDRTENGFDCPDIRNQSQYSH 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,552,530
Number of Sequences: 59808
Number of extensions: 652064
Number of successful extensions: 2288
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2261
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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