Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30438
         (864 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   2.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.7  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   8.4  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 206 LLTTTTIAPVTQASQSLSTT 265
           L+ TTT +P T+ S + STT
Sbjct: 378 LVPTTTASPTTEPSTTTSTT 397


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -3

Query: 121 WTADIFMVN---GSTAVDV*S-TLLHHTGRHIANTVAMFAGF 8
           W  DI + N   G+  V + +  +LHHTG+ +    A++  F
Sbjct: 103 WLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKPPAIYKSF 144


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 786 LKCWNPVTYGILLVQALF 733
           L CW  + Y I+L  ALF
Sbjct: 107 LSCWTNIYYIIILAWALF 124


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 786 LKCWNPVTYGILLVQALF 733
           L CW  + Y I+L  ALF
Sbjct: 160 LSCWTNIYYIIILAWALF 177


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 334 GDIVCVVQECGTPMENEGKNCTSLAP 411
           G IV V++E    +  +GK  ++LAP
Sbjct: 136 GSIVYVMEEGKVEVSRDGKYLSTLAP 161


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 179 TTVRPTPGFLLTTTTIAPVTQASQSLSTTT 268
           TT+  T     TTTT       +Q+ S TT
Sbjct: 659 TTITTTTTTTTTTTTTTTTPNTTQNASATT 688


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 713 CDG*FSFIDDLSGRTHLVF 657
           CD  +++I DLSG   +V+
Sbjct: 184 CDNTYAYISDLSGYALVVY 202


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 379 SPLAYHILELHRQYLLSYNNNVHKLF 302
           S L+   +  +  Y  +YNNN  KL+
Sbjct: 83  SSLSNKTIHNNNNYKYNYNNNCKKLY 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,395
Number of Sequences: 438
Number of extensions: 6125
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)