Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30438
         (864 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40430.1 68418.m04903 myb family transcription factor (MYB22)...    31   0.75 
At1g73130.1 68414.m08456 expressed protein                             31   1.3  
At4g17695.1 68417.m02643 myb family transcription factor (KAN3) ...    30   1.7  
At1g63205.1 68414.m07143 hypothetical protein                          30   1.7  
At5g10500.1 68418.m01216 kinase interacting family protein simil...    29   3.0  
At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative...    29   5.3  
At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative...    29   5.3  
At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family pr...    29   5.3  
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    29   5.3  
At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family pr...    28   9.2  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    28   9.2  
At1g63290.1 68414.m07155 ribulose-phosphate 3-epimerase, cytosol...    28   9.2  
At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...    28   9.2  
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...    28   9.2  
At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containi...    28   9.2  

>At5g40430.1 68418.m04903 myb family transcription factor (MYB22)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 256

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 663 QMSTSTEIIDKTKSPVTENVEIKQTTPVPKEYHTLPDSNILE 788
           +M+ S E I +T  P+T+   I    P+PKE +TL     LE
Sbjct: 205 EMNLSPEAITQTTKPLTDASTISPYIPMPKENYTLEVCESLE 246


>At1g73130.1 68414.m08456 expressed protein
          Length = 646

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +3

Query: 666 MSTSTEIIDKTKSPVTENVEIKQTTPVPKEYHTLPDSNILEKTTIGNVEPI 818
           +S   +++   +S +  + E   T+P+ +EYH   D+N+    ++G+ EPI
Sbjct: 148 LSDEEQLVSDEESQIFPDGERLSTSPLLEEYH---DANLTSAASVGDEEPI 195


>At4g17695.1 68417.m02643 myb family transcription factor (KAN3)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to cDNA GARP-like putative
           transcription factor KANADI3 (KAN3)  GI:15723596
          Length = 322

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 143 GDRTNIELDSRHLYGKWEYSRRRVKYTLASHRSSYCEYSSN 21
           G + N E ++R+L G W  S    ++ L +  SS  + SSN
Sbjct: 237 GSQVNSEREARNLTGLWNNSSSEARFQLKAKASSGVDISSN 277


>At1g63205.1 68414.m07143 hypothetical protein
          Length = 189

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 740 RCLFNFNIFCDG*FSFIDDLSGRTHLVFFLRF 645
           RCLFN+++     F F+DD S  T+  F  RF
Sbjct: 69  RCLFNYHLVDPDDFDFLDDESEETNGDFMKRF 100


>At5g10500.1 68418.m01216 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 848

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +3

Query: 504 RFTTLPSRRVSAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTE 683
           +FT     +   E S  +KE +       + L+ VT+   D   T EK  EE+ +S S  
Sbjct: 745 KFTIYQGAKFEGEVSNMKKENNRIAEELQTGLDQVTKLMKDADTTLEKLSEEFSLSESNT 804

Query: 684 IIDKTKSPV 710
              + +S +
Sbjct: 805 QSSQDRSRI 813


>At5g22030.2 68418.m02564 ubiquitin-specific protease 8, putative
           (UBP8) similar to ubiquitin-specific protease 8 partial
           sequence GI:11993469 [Arabidopsis thaliana]
          Length = 622

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 633 LTTEKSQEEYQMSTSTEIIDKTKSPVTENVEIKQTTPVPKEYHTLPD 773
           + TE   E  +  T  E  DKT +  T +VE   +T V +   +LPD
Sbjct: 359 MPTEFFTENLENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPD 405


>At5g22030.1 68418.m02563 ubiquitin-specific protease 8, putative
           (UBP8) similar to ubiquitin-specific protease 8 partial
           sequence GI:11993469 [Arabidopsis thaliana]
          Length = 622

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 633 LTTEKSQEEYQMSTSTEIIDKTKSPVTENVEIKQTTPVPKEYHTLPD 773
           + TE   E  +  T  E  DKT +  T +VE   +T V +   +LPD
Sbjct: 359 MPTEFFTENLENPTEEEATDKTDTDGTTSVEDTNSTDVKETTESLPD 405


>At5g08130.1 68418.m00948 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 409

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 146 LGDRTNIELDSRHLYGKWEYSRRRVKYTLASHRSSYCEYSSN 21
           +G+R N+  D     G+W  + RR +    +H S +   SS+
Sbjct: 49  VGERVNMRADVAATVGQWPVAERRSQSLTNNHMSGFSSLSSS 90


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 26/99 (26%), Positives = 40/99 (40%)
 Frame = +3

Query: 534 SAEGSGYRKETDNFPYTELSPLEFVTEGSGDTHLTTEKSQEEYQMSTSTEIIDKTKSPVT 713
           S++G G  +E +     + S  E   E   +       S +E      TEI +K +S   
Sbjct: 343 SSQGEGKEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKETEIKEKEESSSQ 402

Query: 714 ENVEIKQTTPVPKEYHTLPDSNILEKTTIGNVEPIDAIN 830
           E  E K+T     E     ++N  +K  I  VE  D+ N
Sbjct: 403 EGNENKETEKKSSESQRKENTNSEKK--IEQVESTDSSN 439


>At5g48560.1 68418.m06005 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 498

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 178 YNGQTNTRFPVNHDNDRTCYSG 243
           +NG+TNT  P+N+ N+    SG
Sbjct: 172 FNGRTNTNLPINNGNNMVNNSG 193


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 31  YSQYDDLCDARVYFTRRRLYSHLP*RCLLSSSI 129
           YSQ+D  CDA ++F +   + + P    LSS I
Sbjct: 136 YSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168


>At1g63290.1 68414.m07155 ribulose-phosphate 3-epimerase, cytosolic,
           putative / pentose-5-phosphate 3-epimerase, putative
           strong similarity to D-ribulose-5-phosphate 3-epimerase
           [Oryza sativa] GI:6007803; contains Pfam profile
           PF00834: Ribulose-phosphate 3 epimerase family
          Length = 227

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +3

Query: 591 SPLEFVTE----GSGDTHLTTEKSQEEYQMSTSTEIIDKTKSP-VTENVEIKQTTPVPKE 755
           +P+++V +    G+       E +QE +Q     E++ K K+  +   V +K  TPV + 
Sbjct: 74  NPMDYVDQMAKAGASGFTFHVEVAQENWQ-----ELVKKIKAAGMRPGVALKPGTPVEQV 128

Query: 756 YHTLPDSNILEKTTIGNVEP 815
           Y  +  +N +E   +  VEP
Sbjct: 129 YPLVEGTNPVEMVLVMTVEP 148


>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 415 HVGLMKYSFYLRSPLAYHILELHRQYLLSYNNNVHKLF 302
           H  L     Y  SPLA   + +++ Y+LS N+ +   F
Sbjct: 270 HPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQF 307


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 415 HVGLMKYSFYLRSPLAYHILELHRQYLLSYNNNVHKLF 302
           H  L     Y  SPLA   + +++ Y+LS N+ +   F
Sbjct: 270 HPDLHNIPIYYASPLAKKCMAVYQTYILSMNDRIRNQF 307


>At1g16830.1 68414.m02023 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 738

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 170 DMSTTVRPTPGFLLTTTTIAPVTQASQSLSTTTRYLWTEL*SKQKKLV 313
           D    V+ T G +++  TIA   +++  LS T++ LW     KQ+K +
Sbjct: 97  DKRLFVKATLGRIISGVTIAYAGKSTMDLSVTSKMLWRCNWVKQRKRI 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,666,763
Number of Sequences: 28952
Number of extensions: 433953
Number of successful extensions: 1285
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)