Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30437
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    24   1.1  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   2.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   6.1  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   6.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   6.1  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.1  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 230 HLELSHHAPVTTAS 189
           H+E++H AP+TT +
Sbjct: 232 HIEVNHSAPITTCN 245


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +3

Query: 93  TMGTKGIKIAELFTKTIAATKGFD---QNLRKLKVTSCGNGS 209
           T+G + +K AE     +   K  D   Q+ RK   +SCGNG+
Sbjct: 12  TVGGRNLKNAEF--NGLPEEKLLDALCQSFRKQNSSSCGNGN 51


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 511 YFGVSA*SQDLIFVFVPNFNFEECNFFSGFTSFGLYFNI 395
           YF     ++  IF+ +P      C F  G  S G  F I
Sbjct: 490 YFISKTLAESPIFIIIPVILTSVCYFMIGLNSQGFRFYI 528


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 511 YFGVSA*SQDLIFVFVPNFNFEECNFFSGFTSFGLYFNI 395
           YF     ++  IF+ +P      C F  G  S G  F I
Sbjct: 490 YFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGFRFYI 528


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 57  VSIDKLLYLNKFTMGTKGIKIAELFTKTIAATKGFDQNLR 176
           + ++K  + NK+    + I+IAE    T    K + QN R
Sbjct: 196 LELEKEFHFNKYLTRRRRIEIAESLRLTERQIKIWFQNRR 235


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 57  VSIDKLLYLNKFTMGTKGIKIAELFTKTIAATKGFDQNLR 176
           + ++K  + NK+    + I+IAE    T    K + QN R
Sbjct: 196 LELEKEFHFNKYLTRRRRIEIAESLRLTERQIKIWFQNRR 235


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = -3

Query: 143 YSFRK*LCNLYTFGTHGKFIQVQ*FINRY 57
           YSF     N  TFG H     V  F+N Y
Sbjct: 144 YSFDL-FANGITFGWHTYIFDVPNFVNEY 171


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 57  VSIDKLLYLNKFTMGTKGIKIAELFTKTIAATKGFDQNLR 176
           + ++K  + NK+    + I+IAE    T    K + QN R
Sbjct: 196 LELEKEFHFNKYLTRRRRIEIAESLRLTERQIKIWFQNRR 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,735
Number of Sequences: 336
Number of extensions: 2660
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)