Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30437
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    53   3e-08
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    28   1.2  
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   1.6  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   2.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   2.8  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   8.6  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.6  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +2

Query: 242 LKSKSTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFY-SAAKEGDNIEVEAKT 418
           L     LHGG IA L D   + AL +   +   GVSID++ +F  S    G +I + AK 
Sbjct: 56  LNRMGNLHGGCIAALTDLGGSLALASR-GLFISGVSIDMNQTFLQSGGTLGSSILLHAKC 114

Query: 419 RKTGKKIAFLEVEVRNKDKNQVLASGRHTKIL 514
            + G  IAF  V+      N+V A GRHTK +
Sbjct: 115 DRLGSNIAFTSVDFLTSS-NEVFAKGRHTKFV 145


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 251 KSTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT- 427
           K+ +HGGFI  ++D    + +  N      GV++ L  ++ + A      ++  KT K  
Sbjct: 74  KNIVHGGFITTMLDEALAFGVFPN-FPSKMGVTVQLDTTYVAPALCSHLYKIVTKTTKVE 132

Query: 428 GKK 436
           G+K
Sbjct: 133 GRK 135


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 329 VDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 436
           +  +G+    S    SA   GD++EVE +  K  K+
Sbjct: 268 ISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKR 303


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 380 AKEGDNIEVEAKTRKTGKKIAFLEVE-VRNKDKNQ 481
           AKE D+IEV+ K  KT  K    +VE   +KD N+
Sbjct: 496 AKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNE 530


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 323 ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTR--KTGKKIAFLEVEVRNKDKNQVLASG 496
           E++D    SIDL +S  +A     N+         KT +K + +  E  N+D N + ++G
Sbjct: 123 ESMDIDMPSIDLDISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTG 182

Query: 497 RHTKILVFSA 526
           R T +L   A
Sbjct: 183 R-TSVLHIDA 191


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 281 HLVDAISTYALTTNENVDTRGVSIDLSLSF 370
           H V + ST+ +  ++N+   G+++  SLS+
Sbjct: 142 HFVTSPSTFFIRYDDNITVAGINVQDSLSY 171


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 518 IPIFWCVCLKP-RLDFCLCSELQLRGMQF 435
           +P F+C CLK  +L + L   ++L G+QF
Sbjct: 523 LPRFFCYCLKKNKLSYAL-KYIRLSGLQF 550


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,228,302
Number of Sequences: 5004
Number of extensions: 41450
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)