Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30437
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1566 + 38283781-38283909,38283985-38284128 62 3e-10
04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834 61 6e-10
07_03_0279 + 16211180-16211410,16211516-16211659,16212466-162125... 46 2e-05
01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866 41 7e-04
02_04_0030 + 19041107-19041334,19041413-19041733 33 0.13
12_02_0289 - 16914975-16916238,16916246-16916484 30 1.2
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 29 3.8
04_01_0404 - 5297341-5297970,5298304-5299179 29 3.8
12_02_0291 + 16951154-16952740 28 5.0
12_02_0277 + 16682836-16684368 28 6.6
12_02_0275 + 16662206-16663738 28 6.6
06_03_1355 - 29522847-29523494 28 6.6
02_05_0873 - 32372143-32372287,32372678-32372754,32372863-323730... 28 6.6
04_01_0411 + 5449769-5450662,5450753-5451382 27 8.7
>01_06_1566 + 38283781-38283909,38283985-38284128
Length = 90
Score = 62.1 bits (144), Expect = 3e-10
Identities = 32/89 (35%), Positives = 52/89 (58%)
Frame = +2
Query: 260 LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKI 439
+HGG +A LVD + + + T GV++++++S+ AA+ + IE+EA+ G+
Sbjct: 1 MHGGAVASLVDLVGSAVFFAGGSPKT-GVTVEITVSYLDAARANEEIEMEARVLGIGETT 59
Query: 440 AFLEVEVRNKDKNQVLASGRHTKILVFSA 526
+ VEVR K +VLA GR TK L S+
Sbjct: 60 GCVTVEVRRKGAGEVLAHGRITKYLAVSS 88
>04_03_1010 - 21704225-21704368,21706407-21706550,21706661-21706834
Length = 153
Score = 61.3 bits (142), Expect = 6e-10
Identities = 31/89 (34%), Positives = 49/89 (55%)
Frame = +2
Query: 260 LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKI 439
L G A L D + + + + + T GVS++L+LS+ A G+ IEVE K + GK +
Sbjct: 64 LLSGVTATLADQLGS-GVFLSSGIGTSGVSLELNLSYVDVASIGEEIEVEGKLLRAGKSV 122
Query: 440 AFLEVEVRNKDKNQVLASGRHTKILVFSA 526
+ V+ R K +++A RHTK L S+
Sbjct: 123 GVVSVDFRKKKTGKLIAQARHTKYLAVSS 151
>07_03_0279 +
16211180-16211410,16211516-16211659,16212466-16212597,
16213478-16213591
Length = 206
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/84 (32%), Positives = 43/84 (51%)
Frame = +2
Query: 254 STLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGK 433
+TLHGG +A + +A+ A D +LS ++ SAA+ +EVEA+ + G+
Sbjct: 81 NTLHGGMVAAVAEAVGM-ACARAAAGDKEMFLGELSTAYLSAARLNSEVEVEAQILRKGR 139
Query: 434 KIAFLEVEVRNKDKNQVLASGRHT 505
+ VE R KD ++ S R T
Sbjct: 140 SVVVTTVEFRLKDTKKLCYSSRAT 163
>01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866
Length = 174
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/79 (29%), Positives = 40/79 (50%)
Frame = +2
Query: 263 HGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIA 442
H G +A VD + + T + V +I ++SF+S A G+ +E++ + K+
Sbjct: 78 HAGAMAAAVDNLCAAVVYTADGVHR--FTISQAMSFFSPAAHGEEVEMDGRVAHRKGKLT 135
Query: 443 FLEVEVRNKDKNQVLASGR 499
VEVR K +++A GR
Sbjct: 136 AAVVEVRRKASGELVAIGR 154
>02_04_0030 + 19041107-19041334,19041413-19041733
Length = 182
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Frame = +2
Query: 260 LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAA--KEGDNIEVEAKTRKTGK 433
L G + LVD + + A + VS D+S+SF S A + GD + + A R G
Sbjct: 82 LAAGAVVSLVDEVGSAASIADGRPVK--VSTDMSVSFVSLAQARPGDRLRITA--RALGH 137
Query: 434 KIAF--LEVEVRNKDKNQVLASGRHT 505
K A+ V + N +V+A GRH+
Sbjct: 138 KGAYSATHVLISNAATGEVVAEGRHS 163
>12_02_0289 - 16914975-16916238,16916246-16916484
Length = 500
Score = 30.3 bits (65), Expect = 1.2
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Frame = +2
Query: 251 KSTLHGGFIAHL-VDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT 427
K+T+ G L D ++ N D R + +D + ++ D IEVE T +
Sbjct: 250 KTTMIGAMANFLDYDVYDLDLISVLNNADLRKLFLDTTDKSIIVIEDIDAIEVELTTNRK 309
Query: 428 GKKIA-------FLEVEVRNKDKNQVLASG 496
GKK A + + +N DK++V SG
Sbjct: 310 GKKAANGDDKHVVIGLSDKNHDKSKVTLSG 339
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 454 NFEECNFFSGFTSFGLYFNIVSFFGC 377
NF+E FF G SF +YF SF+ C
Sbjct: 144 NFQE--FFQGMVSFPIYFPGTSFYRC 167
>04_01_0404 - 5297341-5297970,5298304-5299179
Length = 501
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +3
Query: 411 PKLVKPEKKLHSSKLKFGTKTKIKSWLQADTPKYW 515
P L + ++ ++ GT+ I SW A +P+YW
Sbjct: 368 PHLCRETCEIGGYEIVEGTRVLINSWAMARSPEYW 402
>12_02_0291 + 16951154-16952740
Length = 528
Score = 28.3 bits (60), Expect = 5.0
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Frame = +2
Query: 251 KSTLHGGFIAHLVDAISTYALTT-NENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT 427
KST+ G L + LT+ N + R + +D + ++ D IEVE T++
Sbjct: 256 KSTMIGAMANFLDYDVYDLDLTSVKNNSELRKLFLDTTDKSIIVIEDIDAIEVELTTKRK 315
Query: 428 GKKIA----------FLEVEVRNKDKNQVLASG 496
GKK A +E +N +K++V SG
Sbjct: 316 GKKAANGDEIHDKRMLIEFSDKNDEKSKVTLSG 348
>12_02_0277 + 16682836-16684368
Length = 510
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = +2
Query: 251 KSTLHGGFIAHLVDAISTYALTT-NENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT 427
K+T+ G L + LT+ +N + R + +D + ++ D IEVE T++
Sbjct: 256 KTTMIGAMANFLDYDVYDLDLTSVKDNAELRKLFLDTTDKSIIVIEDIDAIEVELTTKRK 315
Query: 428 GKKI--------AFLEVEVRNK--DKNQVLASG 496
GKK+ + VE+ NK DK++V SG
Sbjct: 316 GKKMDNSDEVDNNHVLVELSNKTDDKSKVTLSG 348
>12_02_0275 + 16662206-16663738
Length = 510
Score = 27.9 bits (59), Expect = 6.6
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Frame = +2
Query: 251 KSTLHGGFIAHLVDAISTYALTT-NENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT 427
K+T+ G L + LT+ +N + R + +D + ++ D IEVE T++
Sbjct: 256 KTTMIGAMANFLDYDVYDLDLTSVKDNAELRKLFLDTTDKSIIVIEDIDAIEVELTTKRK 315
Query: 428 GKKI--------AFLEVEVRNK--DKNQVLASG 496
GKK+ + VE+ NK DK++V SG
Sbjct: 316 GKKMDNSDEVDNNHVLVELSNKTDDKSKVTLSG 348
>06_03_1355 - 29522847-29523494
Length = 215
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 266 GGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSA 379
GG I +L ++ A TN D +DL+L F+ A
Sbjct: 77 GGTIDYLEALVTVMARNTNSRADASFARVDLALRFHGA 114
>02_05_0873 -
32372143-32372287,32372678-32372754,32372863-32373072,
32374645-32374869
Length = 218
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +2
Query: 341 GVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKILVF 520
G+SI+L AAK+ D I + K ++ LEV V++ +N + R ++
Sbjct: 119 GISINLDWKIGIAAKDWDVIAKKEKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTV 178
Query: 521 S 523
S
Sbjct: 179 S 179
>04_01_0411 + 5449769-5450662,5450753-5451382
Length = 507
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 462 GTKTKIKSWLQADTPKYW 515
GT+ I SW A +P+YW
Sbjct: 391 GTRVVINSWAMARSPEYW 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,347,079
Number of Sequences: 37544
Number of extensions: 233182
Number of successful extensions: 617
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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