Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30437
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   7e-12
SB_53116| Best HMM Match : Pkinase (HMM E-Value=1.9e-09)               31   0.72 
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)             30   1.3  
SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)                   30   1.7  
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    27   8.9  
SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)                    27   8.9  

>SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 35/86 (40%), Positives = 51/86 (59%)
 Frame = +2

Query: 257 TLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 436
           TLHGG  A +VD ++T A+ +       GVS+D+++S+  AA  GD +  E    K GK 
Sbjct: 55  TLHGGLTATMVDDVTTMAIISQTG--QAGVSVDMNISYLKAACRGDEVIFEGICNKAGKN 112

Query: 437 IAFLEVEVRNKDKNQVLASGRHTKIL 514
           +AF   E++ KD   VLA G+HTK +
Sbjct: 113 LAFSTAEIKLKD-GTVLAMGKHTKYI 137



 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 123 ELFTKTIAATKGFDQNLRKLKVTSCGNGSMVTEFQVGPEHLNQ 251
           +L+T       GFD+ L K ++ + G G  + +  V  EH N+
Sbjct: 10  QLWTFMTKNNPGFDRVLEKAELAAFGGGRCIIKMTVSQEHENR 52


>SB_53116| Best HMM Match : Pkinase (HMM E-Value=1.9e-09)
          Length = 481

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 311 LTTNENVDTRGVSIDLSLSFYSAAKE-GDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVL 487
           + T  +V  R     L+ S ++  K    NI   +KT+   +    LE ++RNKD N  L
Sbjct: 363 VNTESSVSERNSKSSLATSTFAVPKMLFTNICSLSKTKNRVRAAVALEADLRNKDINICL 422

Query: 488 ASGRHTKILVFSAIV 532
            S  H K     AIV
Sbjct: 423 VSETHLKQDTPDAIV 437


>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
          Length = 552

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 290 DAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT 427
           D +S     T  + DTR   +DL  + +S+ K+ ++ EV+ +T KT
Sbjct: 413 DQVSRRGALTGGHYDTRKSRLDLQRTIWSSGKKVEDEEVQLQTIKT 458


>SB_14144| Best HMM Match : MFS_1 (HMM E-Value=0.047)
          Length = 355

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -1

Query: 163 SKPLVAAIVFVNSSAIFIPLVPMVNLFKYNNLSIDTRCN 47
           + PL    + V+SSAI IPL+      KYN L +DT+ N
Sbjct: 318 ASPLWMNWLLVSSSAICIPLIACFK-GKYNRLDVDTKEN 355


>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 375 VQPKKETILK*RPKLVKPEKKLHSSKLKFGTKT-KIKSWLQADTPK 509
           V+PKK+   K +    KP+KK    K     KT K KS  +A +PK
Sbjct: 127 VKPKKKATPKKKKPAAKPKKKATPKKKAAAKKTKKAKSPKKAKSPK 172


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 407 EAKTRKTGKKIAFLEVEVRNKDKNQV-LASGRHTKI 511
           + K +  GK+I  +E E   K+K Q+ LA   +T+I
Sbjct: 414 DEKIKALGKRILEMEAEAETKEKEQMKLAQSNYTRI 449


>SB_22508| Best HMM Match : DM (HMM E-Value=8.1e-10)
          Length = 450

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 145 AIVFVNSSAIFIPLVPMVNLFKYNNLSIDTR 53
           A+ +VN + + +P +P   + +YN +++ TR
Sbjct: 397 ALNYVNDTIVLLPYIPPAFIAQYNAMALKTR 427


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,846,008
Number of Sequences: 59808
Number of extensions: 281917
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)