Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30437
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-15|AAN63449.1|  148|Caenorhabditis elegans Hypothetical p...    64   1e-10
U29535-16|AAN63448.1|  143|Caenorhabditis elegans Hypothetical p...    60   9e-10
Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    27   7.9  
AF039037-1|AAO21431.1|  312|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U29535-15|AAN63449.1|  148|Caenorhabditis elegans Hypothetical
           protein C25H3.3 protein.
          Length = 148

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 32/85 (37%), Positives = 53/85 (62%)
 Frame = +2

Query: 254 STLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGK 433
           +TLHGG  + L+D  +T AL   +     GVS+DL +++ +AAK G+ + +++   K GK
Sbjct: 56  NTLHGGCTSTLIDIFTTGALLLTKPARP-GVSVDLHVTYLTAAKIGETLVLDSTVIKQGK 114

Query: 434 KIAFLEVEVRNKDKNQVLASGRHTK 508
            +AF + E+  K  N ++A+G HTK
Sbjct: 115 TLAFTKAELYRKSDNVMIATGVHTK 139


>U29535-16|AAN63448.1|  143|Caenorhabditis elegans Hypothetical
           protein C25H3.14 protein.
          Length = 143

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 30/84 (35%), Positives = 49/84 (58%)
 Frame = +2

Query: 257 TLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 436
           TLHGG  A L+D  +T AL   +     GVS+DL +++ +AA  G+ + + +   K G+ 
Sbjct: 57  TLHGGCTAALIDCFTTGALLLTKEARP-GVSVDLHITYLTAANIGETLVLNSTVIKQGRS 115

Query: 437 IAFLEVEVRNKDKNQVLASGRHTK 508
           + F + E+  K  N ++A+G HTK
Sbjct: 116 LGFTKAELYRKRDNAMIATGVHTK 139


>Z93375-3|CAB07565.3|  443|Caenorhabditis elegans Hypothetical
           protein C38C6.5 protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 129 FTKTIAATKGFDQNLRKLKVTSCGNGSMVT 218
           F  ++     F +NL  LK  SC NGSMV+
Sbjct: 372 FFSSVDFLNRFTKNLNNLKTESCLNGSMVS 401


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = -1

Query: 469 FVPNF--NFEECNFFSGFTSFGLYFNIVSFFGCTVET 365
           F+PN   N+     FS F + G Y  I+  FG  +ET
Sbjct: 240 FLPNSISNYAAQFEFSSFQNIGPYIYIIKLFGIAIET 276


>AF039037-1|AAO21431.1|  312|Caenorhabditis elegans Hypothetical
           protein R02C2.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 420 VKPEKKLHSSKLKFGTKTKIKSWLQADTPKYWYLVQLY 533
           V+ E K+H    K G +  I+     +TPK++ LV  Y
Sbjct: 63  VQKEYKIHRRLSKIGHENVIQMMKMIETPKFYSLVMEY 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,698
Number of Sequences: 27780
Number of extensions: 233106
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)