Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30437
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    24   1.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 422 KTGKKIAFLEVEVRNKDKNQ 481
           KTGKKI+ LE E+ N  K Q
Sbjct: 280 KTGKKISELEKEMLNGQKLQ 299


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 460 NFNFEECNFFSGFTSFGLYFNIVS 389
           N+N++  N+ + + S  LY+NI++
Sbjct: 308 NYNYK--NYNNNYNSKKLYYNIIN 329


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 460 NFNFEECNFFSGFTSFGLYFNIVS 389
           N+N++  N+ + + S  LY+NI++
Sbjct: 319 NYNYK--NYNNNYNSKKLYYNIIN 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,060
Number of Sequences: 438
Number of extensions: 2693
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)