Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30437
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04290.1 68414.m00420 thioesterase family protein contains Pf...    68   4e-12
At2g29590.1 68415.m03593 thioesterase family protein contains Pf...    46   1e-05
At3g16175.1 68416.m02042 thioesterase family protein contains Pf...    45   4e-05
At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase...    27   7.3  

>At1g04290.1 68414.m00420 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein; EST
           gb|T45093 comes from this gene
          Length = 155

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 34/89 (38%), Positives = 53/89 (59%)
 Frame = +2

Query: 242 LKSKSTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTR 421
           L +   LHGG  A LVD I +  + T       GVS+++++S+  AA   + IE+E+K  
Sbjct: 60  LNAGKFLHGGATATLVDLIGSAVIYT-AGASHSGVSVEINVSYLDAAFLDEEIEIESKAL 118

Query: 422 KTGKKIAFLEVEVRNKDKNQVLASGRHTK 508
           + GK +A + VE+R K   +++A GRHTK
Sbjct: 119 RVGKAVAVVSVELRKKTTGKIIAQGRHTK 147


>At2g29590.1 68415.m03593 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 158

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 45/82 (54%)
 Frame = +2

Query: 260 LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKI 439
           L  G IA+LVD +   AL   E +    VS+D+S++F S AK G+ +E+ ++        
Sbjct: 70  LANGAIANLVDEVGG-ALVHGEGLPM-SVSVDMSIAFLSKAKLGEELEITSRLLGERGGY 127

Query: 440 AFLEVEVRNKDKNQVLASGRHT 505
               V VRNK   +++A GRH+
Sbjct: 128 KGTIVVVRNKMTGEIIAEGRHS 149


>At3g16175.1 68416.m02042 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 157

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 22/79 (27%), Positives = 45/79 (56%)
 Frame = +2

Query: 263 HGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIA 442
           + G I  ++D+I   A+ ++       +S+DL+ SFYS AK  + +E+EA+   +   + 
Sbjct: 61  NAGVITAVMDSIGASAVYSSGG--GLHISVDLNSSFYSTAKIHETVEIEARVNGSNGGLK 118

Query: 443 FLEVEVRNKDKNQVLASGR 499
              +E+R +   +++A+GR
Sbjct: 119 SAVIEIRRETSGEIIATGR 137


>At1g73500.1 68414.m08509 mitogen-activated protein kinase kinase
           (MAPKK), putative (MKK9) mitogen-activated protein
           kinase kinase (MAPKK) family, PMID:12119167
          Length = 310

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 132 TKTIAATKGFDQ-NLRKLKVTSCGNGSMV 215
           T T+A   G    +L KL V  CGNG +V
Sbjct: 33  TTTVAGCNGISACDLEKLNVLGCGNGGIV 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,294,118
Number of Sequences: 28952
Number of extensions: 205226
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)