Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30436
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 2.0
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 27 4.6
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 27 4.6
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 8.1
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 26 8.1
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
SSPS P PSY P S S+SP S
Sbjct: 1574 SSPSYSPTSPSYSPTSPSYSPTS 1596
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 517 SSPSQPPKPSYLPRSHSWSPVS 582
SSP P+Y+P S S+SP S
Sbjct: 1561 SSPGYSTSPAYMPSSPSYSPTS 1582
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVSLL*RSCWPASTP 618
+SPS P PSY P S S+SP S + P+ +P
Sbjct: 1581 TSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSP 1615
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1609 TSPSYSPTSPSYSPTSPSYSPTS 1631
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTS 1638
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTS 1645
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1630 TSPSYSPTSPSYSPTSPSYSPTS 1652
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPTS 1659
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1644 TSPSYSPTSPSYSPTSPSYSPTS 1666
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1651 TSPSYSPTSPSYSPTSPSYSPTS 1673
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1658 TSPSYSPTSPSYSPTSPSYSPTS 1680
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1665 TSPSYSPTSPSYSPTSPSYSPTS 1687
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1672 TSPSYSPTSPSYSPTSPSYSPTS 1694
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTS 1701
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1686 TSPSYSPTSPSYSPTSPSYSPTS 1708
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1693 TSPSYSPTSPSYSPTSPSYSPTS 1715
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1700 TSPSYSPTSPSYSPTSPSYSPTS 1722
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1707 TSPSYSPTSPSYSPTSPSYSPTS 1729
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1714 TSPSYSPTSPSYSPTSPSYSPTS 1736
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1721 TSPSYSPTSPSYSPTSPSYSPTS 1743
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVS 582
+SPS P PSY P S S+SP S
Sbjct: 1728 TSPSYSPTSPSYSPTSPSYSPTS 1750
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +3
Query: 609 KHTETSYEWFAHP---HHEEHYASSGHGWGRSIDD 704
+H + +Y W+ P HH+EH S H W S DD
Sbjct: 39 QHQQPTY-WYPPPPPRHHKEH-KKSHHHWEYSSDD 71
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 274 LEPLPEEPKAREAQVESRLVDGVADFLENYVV 369
L+ LP E RE VE L + VAD ++ YV+
Sbjct: 249 LDKLPWEDVRREMVVEKGLKEEVADKIKEYVL 280
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 135 SLTTPRTLPRMFGSESCSAAGIAHATPITIKTTR 34
S++TP P F S + + + HA P T ++R
Sbjct: 251 SVSTPGGTPPRFASPALTVESMVHAAPSTTTSSR 284
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 89 LVRQQASPTPRRSPLKRPDTSYR 21
L Q+ PTPR P +P SY+
Sbjct: 624 LETSQSPPTPRTKPSHKPPVSYK 646
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,214,807
Number of Sequences: 5004
Number of extensions: 60220
Number of successful extensions: 228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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