Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30436
(873 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 30 2.8
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984... 30 2.8
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 6.4
07_03_1026 - 23369298-23370326 29 6.4
03_05_0670 - 26594292-26594785,26595222-26595531 29 6.4
02_05_0600 - 30273080-30274692,30274709-30274949 29 6.4
08_01_0203 + 1639993-1641141 28 8.5
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 28 8.5
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 8.5
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 129 TTPRTLPRMFGSESCSAAGIAHATPITIKTTRH 31
T PRT+P+ E C +G A AT + RH
Sbjct: 498 TVPRTVPQPNDHEDCRVSGFAEATNFNDQAGRH 530
>03_02_0613 -
9848514-9848539,9848942-9849200,9849326-9849365,
9849952-9850117,9850228-9850756
Length = 339
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 539 SRRTCQDLTP---GRRYHCSEEAAGQQAHRDQLRMVRPSSP 652
+++ C+D TP GRR +C+ + G + ++RPS P
Sbjct: 116 AKKACEDATPVINGRRANCNLASLGAKPRAQPPHLLRPSPP 156
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.7 bits (61), Expect = 6.4
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVSLL*RSCWPASTP 618
+SPS P PSY P S S+SP S + PA +P
Sbjct: 1623 TSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSP 1657
Score = 28.3 bits (60), Expect = 8.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 517 SSPSQPPKPSYLPRSHSWSPVSLL*RSCWPASTP 618
SSP P P Y P S S+SP S P+ TP
Sbjct: 1554 SSPVYSPGPGYSPTSPSYSPASPSYSPTSPSYTP 1587
>07_03_1026 - 23369298-23370326
Length = 342
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 104 CSGQSLVRQQASPTPRRSPLKRPDTS 27
C+ S R Q SPTP +P RPD S
Sbjct: 263 CATTSSPRVQPSPTPSPAPAARPDPS 288
>03_05_0670 - 26594292-26594785,26595222-26595531
Length = 267
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 226 RWRYFGQQRLPRSARALEPLPEEPKAREAQVESR 327
RWR Q R PRS A++P P P+ Q E +
Sbjct: 22 RWRR--QIRPPRSLAAVDPAPSSPRGERRQGEEK 53
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 511 WVSSPSQPPKPSYLPRSHSWSPVSLL*RSCWPASTPRPVTNGSPI 645
W S+ S PS P S LL R CW AST P SP+
Sbjct: 473 WASTSSPTGLPSPPPTGVSACTAGLLCRRCW-ASTSSPTGLPSPL 516
>08_01_0203 + 1639993-1641141
Length = 382
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 26 MKCLVVLMVIGVAWAMPAAEQDSDP-NILGSVLGVVKECVDGDVTLCLK 169
++C+V +++ V A A E D P NILG + G++ + DVTL ++
Sbjct: 151 IECVVNVVLDPVVTAGDAPELDHPPSNILGHLAGLLGDKGTADVTLVVR 199
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVSLL*RSCWPASTP 618
+SPS P PSY P S S+SP S PA +P
Sbjct: 1755 TSPSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSP 1789
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 298 KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 420
K RE+ ++ RL+ V DF E Y Q K +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,006,796
Number of Sequences: 37544
Number of extensions: 473920
Number of successful extensions: 1640
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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