Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30436
(873 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 31 1.6
SB_54018| Best HMM Match : OS-D (HMM E-Value=5.2) 30 2.1
SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19) 30 2.1
SB_57874| Best HMM Match : LIM (HMM E-Value=0.44) 29 3.8
SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8) 29 3.8
SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73) 29 3.8
SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9) 29 3.8
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 29 6.6
SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28) 29 6.6
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_57716| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.3) 28 8.7
SB_51020| Best HMM Match : BDV_P10 (HMM E-Value=1.9) 28 8.7
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 554 QDLTPGRRYHCSEEAAGQQAHRDQLRM--VRPSSPR 655
+D P RR S + G+QA RD L + ++PSSP+
Sbjct: 2149 EDRRPSRRPSHSSQTFGEQARRDTLTITPIKPSSPK 2184
>SB_54018| Best HMM Match : OS-D (HMM E-Value=5.2)
Length = 671
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 208 EGDHAGRWRYFGQQRLPRSARALEPLPEEPKAREAQVESRLVDGVADFLEN 360
EG AG W G++ L L PLPE+ R + +V VADFL N
Sbjct: 211 EGIDAGIWEK-GREYLVYVRYELRPLPEQNARRGDVFANCVVSYVADFLRN 260
>SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)
Length = 1390
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 208 EGDHAGRWRYFGQQRLPRSARALEPLPEEPKAREAQVESRLVDGVADFLEN 360
EG AG W G++ L L PLPE+ R + +V VADFL N
Sbjct: 334 EGIDAGIWEK-GREYLVYVRYELRPLPEQNARRGDVFANCVVSYVADFLRN 383
>SB_57874| Best HMM Match : LIM (HMM E-Value=0.44)
Length = 1037
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 208 EGDHAGRWRYFGQQRLPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQF 375
EG AG W G++ L L PLPE+ E D A+F+ +YV F
Sbjct: 211 EGIDAGTWEK-GREYLVYVRYELRPLPEQNWEPGPMFEREGSDAFANFVVSYVADF 265
>SB_41916| Best HMM Match : DUF164 (HMM E-Value=0.8)
Length = 391
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +2
Query: 251 GYPGLPGPWSHCPRSPRPGKHRSSLGS 331
G GLP P S P S RPG RSS S
Sbjct: 272 GQAGLPAPPSPGPGSSRPGSSRSSRSS 298
>SB_5396| Best HMM Match : DEAD (HMM E-Value=0.73)
Length = 1017
Score = 29.5 bits (63), Expect = 3.8
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +1
Query: 208 EGDHAGRWRYFGQQRLPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQF 375
EG AG W G++ L L PLPE+ E D A+F+ +YV F
Sbjct: 211 EGIDAGTWEK-GREYLVYVRYELRPLPEQNWEPGPMFEREGSDAFANFVVSYVADF 265
>SB_50810| Best HMM Match : DUF1452 (HMM E-Value=4.9)
Length = 214
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = -1
Query: 210 LLDLKVSTYLKAFS-LRHRVTSPSTHSLTTPRTLPRMFGSESCSAAGIAHATPITIKTT 37
+L L+VS K+ L HR TS +T L++ TLP S S S+ TP +I TT
Sbjct: 1 MLILRVSGADKSRDHLNHRHTSTTTSPLSSSSTLPLSSISSSSSSLLSTITTPYSIITT 59
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 517 SSPS-QPPKPSYLPRSHSWSPVSLL*RSCWPASTP 618
+SPS P PSY P S S+SP S S P+ +P
Sbjct: 678 TSPSYSPASPSYSPTSPSYSPASPSYTSASPSYSP 712
>SB_41580| Best HMM Match : CAP_GLY (HMM E-Value=4.1e-28)
Length = 834
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 195 VSTYLKAFSLRHRVTSPSTHSLT--TPRTLPRMFGSESCSAA 76
V Y K+ S+RHR T H+ T +PR L F C+A+
Sbjct: 66 VKCYAKSASVRHRPTDRRQHAKTSPSPRKLSTHFTEIRCNAS 107
>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.3 bits (60), Expect = 8.7
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +1
Query: 538 KPSYLPRSHSWSPVS 582
K ++LPRSH+W+P+S
Sbjct: 105 KETWLPRSHTWTPLS 119
>SB_57716| Best HMM Match : Phage_fiber_2 (HMM E-Value=4.3)
Length = 189
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 173 KALRYVETLRSKREITLVDGVTLDSKGYPGLPGPWSHCPRSPRPGK 310
K L E L+ + + D G PGP S CP RPG+
Sbjct: 36 KVLSVEEMLKLHNKRVVSANAKYDQNGRRIRPGPTSFCPAPDRPGQ 81
>SB_51020| Best HMM Match : BDV_P10 (HMM E-Value=1.9)
Length = 576
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 173 KALRYVETLRSKREITLVDGVTLDSKGYPGLPGPWSHCPRSPRPGK 310
K L E L+ + + D G PGP S CP RPG+
Sbjct: 387 KVLSVEEMLKLHNKRVVSANAKYDQNGRRIRPGPTSFCPAPDRPGQ 432
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,345,954
Number of Sequences: 59808
Number of extensions: 506037
Number of successful extensions: 1733
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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