Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30436
         (873 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110824-1|AAI10825.1|  212|Homo sapiens tumor suppressor candid...    30   9.5  
BC046919-1|AAH46919.1|  204|Homo sapiens TUSC1 protein protein.        30   9.5  
BC028316-1|AAH28316.1|   90|Homo sapiens TUSC1 protein protein.        30   9.5  

>BC110824-1|AAI10825.1|  212|Homo sapiens tumor suppressor candidate
           1 protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 557 DLTPGRRYHCSEEAAGQQAHRDQLRMVRPSSPRGALRKQRPRLGQVYR 700
           D TP       EEA+  +  RD  R   P SPR ALR +  +L  +YR
Sbjct: 123 DGTPAEARRVPEEASTNRRARDSGREDEPGSPR-ALRARLEKLEAMYR 169


>BC046919-1|AAH46919.1|  204|Homo sapiens TUSC1 protein protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 557 DLTPGRRYHCSEEAAGQQAHRDQLRMVRPSSPRGALRKQRPRLGQVYR 700
           D TP       EEA+  +  RD  R   P SPR ALR +  +L  +YR
Sbjct: 115 DGTPAEARRVPEEASTNRRARDSGREDEPGSPR-ALRARLEKLEAMYR 161


>BC028316-1|AAH28316.1|   90|Homo sapiens TUSC1 protein protein.
          Length = 90

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 19/48 (39%), Positives = 24/48 (50%)
 Frame = +2

Query: 557 DLTPGRRYHCSEEAAGQQAHRDQLRMVRPSSPRGALRKQRPRLGQVYR 700
           D TP       EEA+  +  RD  R   P SPR ALR +  +L  +YR
Sbjct: 1   DGTPAEARRVPEEASTNRRARDSGREDEPGSPR-ALRARLEKLEAMYR 47


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,152,672
Number of Sequences: 237096
Number of extensions: 2489344
Number of successful extensions: 11838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11815
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)