Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30436
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   7.6  
AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen prot...    28   7.6  

>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 74  PAAEQDSDPNI---LGSVLGVVKECVDGDVTLCLKEKALRY 187
           PAA+   DP     L +VLG+ K   D ++    ++ ALRY
Sbjct: 25  PAADHSHDPKKGLHLYNVLGIQKNATDDEIKKAYRKLALRY 65


>AC024778-1|AAF60567.1|  393|Caenorhabditis elegans Collagen protein
           115 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 224 VDGVTLDSK-GYPGLPGPWSHCPRSPRPGKHRS 319
           +DG T+D + G PGLPGP    P  P PG H S
Sbjct: 263 LDGETIDGEDGSPGLPGPPG--PPGP-PGLHGS 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,126,572
Number of Sequences: 27780
Number of extensions: 359605
Number of successful extensions: 1338
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)