Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30436
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    25   0.91 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.4  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 131 KECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGYPGLPGPW 277
           KE +  DV + +       ++ +R+ R+ + +DGVTL +     +  PW
Sbjct: 125 KEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALDGVTLLADNSVSIKDPW 173


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = +2

Query: 566 PGRRYHCSEEAAGQQAHRDQLRMVRPSSPRGALRKQRPRLGQVYR*R 706
           P RR  C  +  G +    +L  V    PR     +R    QV R R
Sbjct: 404 PSRRNSCESQMMGDEMSLRELTQVTEEKPRVMKMGKRNIKAQVKRFR 450


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 642 HPHHEEHYASSGH 680
           H HH  H+A  GH
Sbjct: 280 HVHHANHHAILGH 292


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 591 KKLLASKHTETSYEWFAHPHHEEHYASSGH 680
           +KLLA K TE   +  A   H++    + H
Sbjct: 404 EKLLAFKMTEQQQQMQAQQQHQQQQQQTQH 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,591
Number of Sequences: 438
Number of extensions: 4044
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)