Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30435
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    29   0.87 
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    27   2.7  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   4.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   6.1  

>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 446 SSRRYRGRVSRLYTEQAPSLPPQQF 372
           + R  RG+V RLYTE+A SL  ++F
Sbjct: 354 AGRTMRGKVFRLYTEKAYSLMKEEF 378


>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 706 EKGPSSSEIRIKGAPTIRSIKKVPYEVKVPVDRPYMYTCLSLPRP 840
           EK P S+   + G    + IK++   +++PV  P ++  L +P+P
Sbjct: 137 EKIPDSTYEMVGGLE--KQIKEIKEVIELPVKHPELFESLGIPQP 179


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 610 YESKSKCPLPTPLRRKSLMK*KCPFPQPYTVREK 711
           + +   C L  PL  K+L   + PF  PY + E+
Sbjct: 6   FSNSETCSLSDPLTSKTLSSIENPFDDPYILSEE 39


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +3

Query: 6   GDHNEV---HGYFGGIVGRGCLCQGGERHTEAVEEKKQDKRGIYDIGSYG 146
           G HNE+   +G +  +V    L  GGE+  E VEE+ +D      I S+G
Sbjct: 647 GSHNELLDLNGAYARLVEAQKL-SGGEKDQEMVEEELEDAPREIPITSFG 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,627
Number of Sequences: 5004
Number of extensions: 57181
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)