Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30435
         (875 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0576 + 25765137-25766420                                         29   3.7  
07_03_1188 + 24671022-24672482                                         29   6.5  
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    29   6.5  
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501...    29   6.5  
04_03_0286 + 13915705-13915984,13916478-13917062,13918188-139186...    29   6.5  
04_04_1459 + 33758891-33758954,33759101-33759327,33759916-337599...    28   8.5  
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802...    28   8.5  

>03_05_0576 + 25765137-25766420
          Length = 427

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 91  ASVCLSPPWQRQPRPTMPP 35
           A+V +SPP Q +PRP +PP
Sbjct: 97  AAVSVSPPTQPRPRPELPP 115


>07_03_1188 + 24671022-24672482
          Length = 486

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/74 (29%), Positives = 30/74 (40%)
 Frame = -1

Query: 251 ASEIVSFLVTEADTFVPSIAFVTAVAFIATSEIMSSIRSYVIDAPFVLFLLFDCFGVPFS 72
           A+E+  FLV          A    V  +A      ++RS V + P  L    D       
Sbjct: 98  AAELFRFLVRRRSLHPSDSALAPVVRHLARRRDFPAVRSLVQEFPSALG--HDTLDAYLL 155

Query: 71  SLAKATTANDATKI 30
           SLA+A  A DA K+
Sbjct: 156 SLARAGRATDAVKV 169


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 395 PSLPPQQF*CARGVHDDRGGSRLRWQL 315
           P LPP+   C   VH D GG+ +RW L
Sbjct: 247 PPLPPE---CNAQVHTDYGGAAVRWGL 270


>05_03_0470 +
           14448243-14448482,14448568-14449181,14449508-14450135,
           14450217-14450827,14450911-14451162,14451243-14451353,
           14451441-14451501,14451603-14451695,14451773-14451940
          Length = 925

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 67  KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 237
           KE +  P++SKR+ K K  S   D+  +      ++  A+TK  +G +   SV +KD
Sbjct: 78  KEGETAPRRSKRQPKKKVPSKDDDVPANTTGTKKIERLAITKKRKGER---SVNRKD 131


>04_03_0286 +
           13915705-13915984,13916478-13917062,13918188-13918661,
           13918963-13920208,13920282-13920297
          Length = 866

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 9   DHNE-VHGYFGGIVGRGCLCQGG 74
           +H++ + GYF  I+G  CLC GG
Sbjct: 251 EHSKCMDGYFAPILGYNCLCDGG 273


>04_04_1459 +
           33758891-33758954,33759101-33759327,33759916-33759966,
           33760265-33760313,33760738-33761018
          Length = 223

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 54  GCLCQGGERHTEAVEEKKQDKRG 122
           G LC GGE    A EEKK+ ++G
Sbjct: 143 GGLCVGGELQVRAEEEKKEVRKG 165


>02_02_0223 -
           8021040-8021247,8022275-8022367,8022808-8023059,
           8023143-8023597,8023667-8023983,8024019-8024298,
           8024423-8024728,8024762-8025130,8025216-8025455
          Length = 839

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +1

Query: 67  KEEKGTPKQSKRRNKTKGASMT*DLMEDIISEVAMKATAVTKAMEGTKVSASVTKKD 237
           KE + TP +SKR+ K K  S   D+  +       + +A+TK  +G +   SV +KD
Sbjct: 78  KEGETTPWRSKRQPKKKVPSKDDDVPANTTGTKNSERSAITKKRKGER---SVNRKD 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,534,374
Number of Sequences: 37544
Number of extensions: 424885
Number of successful extensions: 1278
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)