Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30435
         (875 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X61499-1|CAA43716.1|  415|Homo sapiens NF-kB subunit protein.          30   9.6  

>X61499-1|CAA43716.1|  415|Homo sapiens NF-kB subunit protein.
          Length = 415

 Score = 30.3 bits (65), Expect = 9.6
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 6   GDHNEVHGYFGGIVGRGCLCQGGERHTEAVEEKKQDKRG 122
           G      GY G   G G L +GG +  EAVEEK   + G
Sbjct: 359 GSGGAAGGYGGAGGGEGVLMEGGVKVREAVEEKNLGEAG 397


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,206,228
Number of Sequences: 237096
Number of extensions: 2298096
Number of successful extensions: 5530
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5527
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)