Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30433
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 130 2e-31
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 130 2e-31
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 28 1.8
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 27 2.4
SPAC1610.01 ||SPAC17A5.17|conserved fungal protein|Schizosacchar... 26 7.3
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 25 9.7
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 130 bits (314), Expect = 2e-31
Identities = 55/85 (64%), Positives = 68/85 (80%)
Frame = -2
Query: 762 FVKVVKNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 583
F+K VK+ YF RYQ K++RRREGKT YYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3 FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62
Query: 582 QVAYSRIEGDHIVCAAYSHELPRYG 508
Q+ SR+ GD+++ A+S ELPRYG
Sbjct: 63 QIVSSRVNGDYVLAHAHSSELPRYG 87
Score = 70.1 bits (164), Expect = 3e-13
Identities = 38/104 (36%), Positives = 54/104 (51%)
Frame = -1
Query: 508 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLD 329
+K GL N+ AAY+TG + E +++GP F+ +LD
Sbjct: 88 IKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLD 147
Query: 328 VGLARTTTGARVFGAMKGAVDGGLKFLIPSKDSPRYDAESKKFN 197
VGL RT+TG+RVFGAMKGA DGGL P +D E+++ +
Sbjct: 148 VGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELD 191
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 192 EVHRAHIFGLHVAEYMRSL 136
E R +I+G HVAEYM L
Sbjct: 193 ETLRKYIYGGHVAEYMEML 211
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 130 bits (314), Expect = 2e-31
Identities = 55/85 (64%), Positives = 68/85 (80%)
Frame = -2
Query: 762 FVKVVKNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 583
F+K VK+ YF RYQ K++RRREGKT YYARKRL+ Q KNKYN PKYRL+VR SN+ VTC
Sbjct: 3 FIKAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTC 62
Query: 582 QVAYSRIEGDHIVCAAYSHELPRYG 508
Q+ SR+ GD+++ A+S ELPRYG
Sbjct: 63 QIVSSRVNGDYVLAHAHSSELPRYG 87
Score = 70.1 bits (164), Expect = 3e-13
Identities = 38/104 (36%), Positives = 54/104 (51%)
Frame = -1
Query: 508 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLD 329
+K GL N+ AAY+TG + E +++GP F+ +LD
Sbjct: 88 IKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLD 147
Query: 328 VGLARTTTGARVFGAMKGAVDGGLKFLIPSKDSPRYDAESKKFN 197
VGL RT+TG+RVFGAMKGA DGGL P +D E+++ +
Sbjct: 148 VGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELD 191
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 192 EVHRAHIFGLHVAEYMRSL 136
E R +I+G HVAEYM L
Sbjct: 193 ETLRKYIYGGHVAEYMEML 211
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 640 FVLVLN---NEAFTSIIXSFPFTTPLEFYLVPLEVLFVLHNFNEPI 768
F L LN +E T ++ FPF +P++ E+ +LHN +P+
Sbjct: 1136 FELTLNYDFSELLTKVV--FPFLSPVDTITAEQEMRDLLHNIRQPL 1179
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -3
Query: 188 YTGLTSLVCMLLNT*EVLNQDDEDSFPRGNFSKYIKTRRSLQ-----MLFESHLQESPWK 24
+T TSL L N +Q + P G F +++ R +Q +LFE H + +
Sbjct: 185 FTTFTSLELFLRNVLVHNDQRAISAAPEGTFERHVGKGRQIQSLMKSLLFEYHHENVNYV 244
Query: 23 PSVRD 9
P++ D
Sbjct: 245 PTIAD 249
>SPAC1610.01 ||SPAC17A5.17|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 131 QDDEDSFPRGNFSKYIKTRRSLQMLFESHLQESPWK 24
+ DE+SFP G + T +S +LF+ Q S WK
Sbjct: 41 RSDEESFPLGKLITLLVTSQSF-ILFDEE-QNSGWK 74
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 9.7
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = -2
Query: 213 NPKSSMAEVHRAHIFGLHVAEYM 145
+PK S+++V + +FG+ +AE++
Sbjct: 240 SPKDSLSKVTKYQMFGIDIAEWL 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,246
Number of Sequences: 5004
Number of extensions: 71962
Number of successful extensions: 194
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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