Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30433
(814 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0) 114 7e-26
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30) 101 7e-22
SB_31093| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 30 2.6
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 30 2.6
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_33163| Best HMM Match : RIIa (HMM E-Value=2.8) 28 7.8
>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
Length = 328
Score = 114 bits (275), Expect = 7e-26
Identities = 60/104 (57%), Positives = 66/104 (63%)
Frame = -1
Query: 508 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLD 329
VKVGLTNYAAAY TG DEYNVE VD PGAFRC+LD
Sbjct: 120 VKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVDGSPGAFRCFLD 179
Query: 328 VGLARTTTGARVFGAMKGAVDGGLKFLIPSKDSPRYDAESKKFN 197
VGLART+TGARVFGA+KGAVDGGL+ K P YD+ESK F+
Sbjct: 180 VGLARTSTGARVFGALKGAVDGGLEIPHSMKRFPGYDSESKDFS 223
Score = 77.8 bits (183), Expect = 1e-14
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = -2
Query: 705 RRREGKTXYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 580
RR +GKT YYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17 RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58
Score = 42.3 bits (95), Expect = 4e-04
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
Frame = -2
Query: 237 KIPRAMMQNP------KSSMAEVHRAHIFGLHVAEYMRSL 136
+IP +M + P K AEVHR HIFG HVAEYMRSL
Sbjct: 204 EIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSL 243
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/88 (28%), Positives = 42/88 (47%)
Frame = -2
Query: 771 KYGFVKVVKNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKYRLIVRLSNKD 592
KY FV + NK + + K G T Y R + KYN ++
Sbjct: 43 KYRFVVRITNKDIICQERNKVGGPIFGSTQKYRRN-----SRGKYNKRNIFIL------Q 91
Query: 591 VTCQVAYSRIEGDHIVCAAYSHELPRYG 508
++AY++++GD ++ +AY+HELP +G
Sbjct: 92 TYARIAYAKLDGDRVLASAYAHELPNFG 119
>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
Length = 113
Score = 101 bits (242), Expect = 7e-22
Identities = 51/85 (60%), Positives = 56/85 (65%)
Frame = -1
Query: 508 VKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLD 329
VKVGLTNYAAAY TG DEYNVE +D PGAFRC+LD
Sbjct: 25 VKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESIDGSPGAFRCFLD 84
Query: 328 VGLARTTTGARVFGAMKGAVDGGLK 254
VGLART+TGARVFGA+KGAVDGGL+
Sbjct: 85 VGLARTSTGARVFGALKGAVDGGLE 109
Score = 47.2 bits (107), Expect = 2e-05
Identities = 17/24 (70%), Positives = 23/24 (95%)
Frame = -2
Query: 579 VAYSRIEGDHIVCAAYSHELPRYG 508
+AY+++EGD I+CAAY+HELPRYG
Sbjct: 1 IAYAKLEGDVIICAAYAHELPRYG 24
>SB_31093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 36.7 bits (81), Expect = 0.022
Identities = 21/61 (34%), Positives = 32/61 (52%)
Frame = +3
Query: 168 QRCEPCVLQPLNFLDSAS*RGESFDGMRNLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLN 347
+R E C Q + F+ A GES+DGMRN + PF+ P P++ +K K + N
Sbjct: 110 KRAEDCGFQAIVFVVDAPITGESYDGMRNRK--RNIPFLPPGITPPLLDFSKMKGKGNKN 167
Query: 348 A 350
+
Sbjct: 168 S 168
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 225 RGESFDGMRNLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 368
R +++ +RP PF+ P +RAP A PT+ P P S+
Sbjct: 346 RRNAYNPHAMMRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 393
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 225 RGESFDGMRNLRPPSTAPFIAPKTRAPVVVRAKPTSK*HLNAPGPLST 368
R +++ +RP PF+ P +RAP A PT+ P P S+
Sbjct: 212 RRNAYNPHAMMRPAHIGPFLYPDSRAPFSPLASPTASSDSGHPSPGSS 259
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = -2
Query: 618 LIVRLSNKDVTCQVAYSRIEGD-HIVC 541
L++ LS +D+TC V YS G+ H +C
Sbjct: 108 LLLYLSKRDITCPVPYSSRNGELHTMC 134
>SB_33163| Best HMM Match : RIIa (HMM E-Value=2.8)
Length = 511
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +3
Query: 75 PSFNVLAEIASWKRILIILVQDFSCIQQHANQRCEPCVLQPLNFLDSAS*RGESFDGMR 251
PSF A +KR L++ Q +++ + Q+C CVL+ + + RG+ + G R
Sbjct: 332 PSFFEAKLYADYKRFLLVRGQRDVTMRKISEQQCFQCVLKESHAPPPSLPRGDPYWGSR 390
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,444,763
Number of Sequences: 59808
Number of extensions: 569141
Number of successful extensions: 1502
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1499
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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