Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30433
         (814 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    25   0.83 
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    25   0.83 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.8  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   7.8  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   7.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   7.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   7.8  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   7.8  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   7.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.8  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 747 KNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKY 622
           KN++ +++Y+   K R   +T     K   +   N YN   Y
Sbjct: 273 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 314



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 208 SRTHGFQHTSSRYSRERSCS 227


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 747 KNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKY 622
           KN++ +++Y+   K R   +T     K   +   N YN   Y
Sbjct: 284 KNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNY 325



 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 6   WIPHGWL 26
           W PHGW+
Sbjct: 178 WTPHGWM 184


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 208 SRTHGFQHTSSRYSRERSCS 227


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 10  SRTDGFQGLSCRWLSNSICS 69
           SRT GFQ  S R+     CS
Sbjct: 219 SRTHGFQHTSSRYSRERSCS 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,467
Number of Sequences: 438
Number of extensions: 4933
Number of successful extensions: 19
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)