Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30433
         (814 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   122   3e-28
At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   121   5e-28
At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containi...    28   6.4  

>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  122 bits (294), Expect = 3e-28
 Identities = 53/85 (62%), Positives = 66/85 (77%)
 Frame = -2

Query: 762 FVKVVKNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 583
           FVK  K+  YFKRYQVKF+RRR+GKT Y AR RL+ QDKNKYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 582 QVAYSRIEGDHIVCAAYSHELPRYG 508
           Q+  + I GD +  +AY+HELP+YG
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYG 87



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 43/102 (42%), Positives = 54/102 (52%)
 Frame = -1

Query: 502 VGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVG 323
           VGLTNYAAAY TG                         ++++VEP D+    FR  LDVG
Sbjct: 90  VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVG 148

Query: 322 LARTTTGARVFGAMKGAVDGGLKFLIPSKDSPRYDAESKKFN 197
           L RTTTG RVFGA+KGA+DGGL      K    +  E+K+ +
Sbjct: 149 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLD 190



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 195 AEVHRAHIFGLHVAEYMRSL 136
           AE+HR +I+G HV+ YM+ L
Sbjct: 191 AEIHRNYIYGGHVSNYMKLL 210


>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  121 bits (292), Expect = 5e-28
 Identities = 53/85 (62%), Positives = 66/85 (77%)
 Frame = -2

Query: 762 FVKVVKNKQYFKRYQVKFKRRREGKTXYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 583
           FVK  K+  YFKRYQVKF+RRR+GKT Y AR RL+ QDKNKYNTPKYR +VR +NKD+  
Sbjct: 3   FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62

Query: 582 QVAYSRIEGDHIVCAAYSHELPRYG 508
           Q+  + I GD +  +AY+HELP+YG
Sbjct: 63  QIVSASIAGDIVKASAYAHELPQYG 87



 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 43/102 (42%), Positives = 54/102 (52%)
 Frame = -1

Query: 502 VGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXDEYNVEPVDNGPGAFRCYLDVG 323
           VGLTNYAAAY TG                         ++++VEP D+    FR  LDVG
Sbjct: 90  VGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDSRR-PFRALLDVG 148

Query: 322 LARTTTGARVFGAMKGAVDGGLKFLIPSKDSPRYDAESKKFN 197
           L RTTTG RVFGA+KGA+DGGL      K    +  E+K+ +
Sbjct: 149 LIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFHKENKQLD 190



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 195 AEVHRAHIFGLHVAEYMRSL 136
           AE+HR +I+G HV+ YM+ L
Sbjct: 191 AEIHRNYIYGGHVSNYMKLL 210


>At2g39230.1 68415.m04818 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 867

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 109 GKESSSSWFKTSHVFSNMQTKDVSPVYFSH*TFWILHHSAGNL 237
           G      + K S +   M+ KDV+P    + T    HH  GNL
Sbjct: 774 GLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVIAGHHREGNL 816


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,336,100
Number of Sequences: 28952
Number of extensions: 382631
Number of successful extensions: 884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)