Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30432
         (801 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PFZ2 Cluster: Chromosome chr6 scaffold_15, whole geno...    33   6.3  
UniRef50_A0D118 Cluster: Chromosome undetermined scaffold_330, w...    33   6.3  

>UniRef50_A7PFZ2 Cluster: Chromosome chr6 scaffold_15, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr6 scaffold_15, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 682

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 573 RLSANSAHNPLPAHSNAPRAHLRPEHTNSSVNLEVIKFTYVRILHNTILSIRLGHIT-LV 397
           +L+ANS H  L   S   +    PEH +    LE++   Y + L + I ++  G +   +
Sbjct: 459 QLTANSLHRMLLTFSEQTQGQKFPEHASDQQMLEIVMARYEKELMHPIQNLLKGELAHAL 518

Query: 396 LIVICKLFLN 367
           LI I KL L+
Sbjct: 519 LIQIQKLKLD 528


>UniRef50_A0D118 Cluster: Chromosome undetermined scaffold_330,
           whole genome shotgun sequence; n=5; Eukaryota|Rep:
           Chromosome undetermined scaffold_330, whole genome
           shotgun sequence - Paramecium tetraurelia
          Length = 2335

 Score = 33.5 bits (73), Expect = 6.3
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +1

Query: 406 NMTQPNTQDCIM*NSYVCKFNYFK 477
           N T   T++C++ N+Y CKFNY K
Sbjct: 758 NTTAVTTRECLLVNAYYCKFNYTK 781


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 689,217,261
Number of Sequences: 1657284
Number of extensions: 12172107
Number of successful extensions: 22510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22503
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)