Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30432
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        32   0.005
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   8.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   8.7  

>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 570 LSANSAHNPLPAHSNAPRAHLRPEHTNSSVNLEVIKFTYVRILHNTILSIRLGH 409
           L+ N AHNP P+HS  P ++L P   N+  NL      Y     N + ++   H
Sbjct: 338 LTHNIAHNPYPSHSIYPSSNLMP--LNNIQNLSQSGINYKDTNDNNVSAVTTQH 389


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 588 ITAIPRLSANSAHNPLPAHSNAPRA 514
           +TA+P LS +  H    +  N P A
Sbjct: 71  MTALPHLSGDMTHGASISPQNTPPA 95


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 588 ITAIPRLSANSAHNPLPAHSNAPRA 514
           +TA+P LS +  H    +  N P A
Sbjct: 71  MTALPHLSGDMTHGASISPQNTPPA 95


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,650
Number of Sequences: 336
Number of extensions: 3430
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)