Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30432
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    31   0.19 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    29   0.77 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.5  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -1

Query: 603 NFDTAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSSVNLEVIKFTYV 451
           N DT  TAIP    +S  + +   S+ P  H+ P +TNS  N   +  TY+
Sbjct: 113 NNDTYSTAIPFSKDSSVFDAVGQQSSVP-IHINPAYTNSHQNSYSLNETYL 162


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 669 NVSLILYKMHVSVGQ*IQ-RFTHNFDTAITAIPRLSANSAHNPL 541
           +++ +L  MH SV   +  R TH +D+   ++ RL+A   H P+
Sbjct: 63  DLNFLLENMHASVFPTVDVRITHGYDSKSDSLARLTAQMNHCPV 106


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 430  PEY*VGSYYISINSYMQIIFKLRYIFNNPVL 338
            PE+     + S N++ QII  + +I +NP L
Sbjct: 1024 PEFDYAGAWASTNTHKQIIEHVNFIMDNPEL 1054


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,261
Number of Sequences: 5004
Number of extensions: 56121
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)