Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30432
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    30   2.2  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    30   2.2  
Z99710-4|CAB16865.1|  660|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical protein
            C25D7.3 protein.
          Length = 2150

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -1

Query: 669  NVSLILYKMHVSVGQ*IQRFTHNFDTAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTN 490
            N+S  +YK+ ++V   I+ F  +F   +T  P+   +  H PL  ++    A LR + + 
Sbjct: 1846 NISGQIYKISMTVTDRIKGFDDDFIKLLTQFPK-KLSQEHKPLVDYNKLAHA-LREKASL 1903

Query: 489  SSVNLEVIKFTYVRILHN 436
               N ++  FT+  ++ N
Sbjct: 1904 HLNNHKITPFTFHGVISN 1921


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger protein
            protein.
          Length = 2150

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = -1

Query: 669  NVSLILYKMHVSVGQ*IQRFTHNFDTAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTN 490
            N+S  +YK+ ++V   I+ F  +F   +T  P+   +  H PL  ++    A LR + + 
Sbjct: 1846 NISGQIYKISMTVTDRIKGFDDDFIKLLTQFPK-KLSQEHKPLVDYNKLAHA-LREKASL 1903

Query: 489  SSVNLEVIKFTYVRILHN 436
               N ++  FT+  ++ N
Sbjct: 1904 HLNNHKITPFTFHGVISN 1921


>Z99710-4|CAB16865.1|  660|Caenorhabditis elegans Hypothetical
           protein F08A8.3 protein.
          Length = 660

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 576 PRLSANSAHNPLPAHSN--APRAHLRPEHTNSSVNLEVIKFTYVRILHNTILSIR 418
           P+++ N A N     +N   PR +L   HT    N   IK ++ +I +++++ +R
Sbjct: 238 PKMAFNGADNGYLGFNNHRIPRTNLLMRHTKVEANGTYIKPSHAKIGYSSMVKVR 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,225,615
Number of Sequences: 27780
Number of extensions: 300833
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)