Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30432
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36880.1 68417.m05229 cysteine proteinase, putative strong si...    32   0.39 
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    30   1.6  
At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylas...    28   6.3  
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote...    28   8.3  
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote...    28   8.3  
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote...    28   8.3  
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote...    28   8.3  
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote...    28   8.3  
At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol pro...    28   8.3  

>At4g36880.1 68417.m05229 cysteine proteinase, putative strong
           similarity to cysteine proteinase COT44 precursor
           SP:P25251 from [Brassica napus] (Rape)
          Length = 376

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 157 YNIRCDVGAVRYYFRFIKQSGRLNHYKDY 243
           YN  C+ G + Y F+FI ++G LN  KDY
Sbjct: 204 YNQGCNGGLMDYAFQFIMKNGGLNTEKDY 232


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = -1

Query: 591 AITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSSVN 478
           +ITA  RL+A +AH P  ++ +A  A L P + +SS+N
Sbjct: 5   SITARRRLAAFAAHFPATSYDSASTASLVPLNCSSSLN 42


>At2g37690.1 68415.m04622 phosphoribosylaminoimidazole carboxylase,
           putative / AIR carboxylase, putative similar to
           SP|P55195 Phosphoribosylaminoimidazole carboxylase,
           chloroplast precursor (EC 4.1.1.21) (AIR carboxylase)
           (AIRC) {Vigna aconitifolia}; contains Pfam profiles
           PF02222: ATP-grasp domain, PF00731: AIR carboxylase
          Length = 642

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 785 LYQLFGTKVDIKLVN-HRNKDLLYTYXXXXXXXFVMLYIA 669
           +  LFG   ++K+V+ HR  +++YTY        V + IA
Sbjct: 496 ILDLFGVTHEVKIVSAHRTPEMMYTYATSAHSRGVQVIIA 535


>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 388

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 TAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSS 484
           T   A PR   +S  +P  +H ++PR+H   E  NSS
Sbjct: 148 TRRAAGPRSLVSSRSSPTGSHPSSPRSHSENEGYNSS 184


>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 388

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 TAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSS 484
           T   A PR   +S  +P  +H ++PR+H   E  NSS
Sbjct: 148 TRRAAGPRSLVSSRSSPTGSHPSSPRSHSENEGYNSS 184


>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 506

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 TAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSS 484
           T   A PR   +S  +P  +H ++PR+H   E  NSS
Sbjct: 148 TRRAAGPRSLVSSRSSPTGSHPSSPRSHSENEGYNSS 184


>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 505

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 TAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSS 484
           T   A PR   +S  +P  +H ++PR+H   E  NSS
Sbjct: 148 TRRAAGPRSLVSSRSSPTGSHPSSPRSHSENEGYNSS 184


>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 505

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 594 TAITAIPRLSANSAHNPLPAHSNAPRAHLRPEHTNSS 484
           T   A PR   +S  +P  +H ++PR+H   E  NSS
Sbjct: 148 TRRAAGPRSLVSSRSSPTGSHPSSPRSHSENEGYNSS 184


>At1g47128.1 68414.m05222 cysteine proteinase (RD21A) / thiol
           protease identical to SP|P43297 Cysteine proteinase
           RD21A precursor (EC 3.4.22.-) {Arabidopsis thaliana},
           thiol protease RD21A SP:P43297 from [Arabidopsis
           thaliana]
          Length = 462

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 157 YNIRCDVGAVRYYFRFIKQSGRLNHYKDY 243
           YN  C+ G + Y F FI ++G ++  KDY
Sbjct: 196 YNEGCNGGLMDYAFEFIIKNGGIDTDKDY 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,938
Number of Sequences: 28952
Number of extensions: 263510
Number of successful extensions: 436
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)