Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30431
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    29   0.70 
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    27   2.8  
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.8  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   6.6  
SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subu...    25   8.7  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.7  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 250  LSSCLRMSMSNKVSKTECKRNQYINILQNIPKPLVKLY--GCIEVTK 384
            LS+C+   + NK+S T+ K  +Y  IL+   K   K Y   CIE  K
Sbjct: 3067 LSNCVEKVLHNKISITDLK-TEYEEILEQTLKKECKAYERSCIENVK 3112


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = -2

Query: 663 KHINY*YNQAL*YRLMLTNNF*LKYYIFNIACYCMIIFHIHFYKHLN---LKYLMHVEHN 493
           + IN+ +     Y + L N F  +  +++I   C++ +H H + H+    L+ L+++   
Sbjct: 126 RFINHLFGYLNRYWVKLKNRF-TETLVYDIYTLCLVSWHHHVFSHIRDSLLQNLLYMFTK 184

Query: 492 KRNQLIIDITY 460
           KR     D+ Y
Sbjct: 185 KRLYEPTDMKY 195


>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 334 FAKY*YTDFFYIQSCSLCYSLTFASRTIRK 245
           F ++ Y D  Y+Q CSLC +    + T  K
Sbjct: 41  FKRWLYEDRIYVQGCSLCLAKAINAITHEK 70


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 20  HLLYTFIQLSIFFPESLMNETLSF 91
           HLLY ++  S  FP+SL+   ++F
Sbjct: 340 HLLYKYLLFSPKFPKSLLQYVITF 363


>SPAPB1E7.10 |rpc17||DNA-directed RNA polymerase III complex subunit
           Rpc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 129

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +1

Query: 223 CNGFQHYTFLSSCLRMSMSNKVSKTECKRNQYINILQNIPKPLVKLYGCIEVTKE 387
           C G     FL  C+ +    +++K E      + IL N P  + +LY CIE  +E
Sbjct: 62  CEGLTKERFLD-CIAIFNEFELTKAEI-----LVILNNKPSSVPELYACIEGIEE 110


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 87  DKVSFIKDSGKKILSCINVYN 25
           D+ SF+K++  K+ SCI  +N
Sbjct: 459 DEESFLKENKYKVFSCITCHN 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,116
Number of Sequences: 5004
Number of extensions: 55870
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)