Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30431
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0460 - 8654283-8654302,8654669-8654847,8654940-8655125,865...    30   2.2  
08_02_1536 + 27684789-27685517                                         28   6.9  

>03_02_0460 -
           8654283-8654302,8654669-8654847,8654940-8655125,
           8655626-8655781,8656223-8656431,8657254-8657358
          Length = 284

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 591 YYIFNIACYCMIIFHIHFYKHLNLKYLMHVEHNKRNQLIIDITYPSK 451
           YYIFN     +++FHI+++K + L  +  +  N + Q+  D+   S+
Sbjct: 237 YYIFNTMLLTLLVFHIYWWKLICLMIMKQL--NNKGQVGEDVRSDSE 281


>08_02_1536 + 27684789-27685517
          Length = 242

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 205 STFFKVCNGFQHYTFLSSCLRMSMSNKVSKTE-CKRNQYINILQNIPKPLVKLYGCIEVT 381
           +T   +CNGF+  T + SC+   M    S+   CK  Q   + + + + L  L  C  + 
Sbjct: 37  ATMETMCNGFRRLTDVYSCMDEIMCLPSSQASLCKHQQRREVEKELERSLTLLDLCNAMQ 96

Query: 382 KEF 390
           + F
Sbjct: 97  ESF 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,711,059
Number of Sequences: 37544
Number of extensions: 260990
Number of successful extensions: 454
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)