Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30431
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical pr...    32   0.50 
U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm recept...    29   4.6  
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical
           protein F10G8.2 protein.
          Length = 239

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -2

Query: 597 LKYYIFNIACYCMIIFHIH-FYKHLNLKYLMHVEHNKRNQLIIDITYPSKTSTII 436
           +K  +  ++C+  II     ++K     +++HV HN  ++L+++ T  S++ST++
Sbjct: 76  IKIAVIAVSCFPYIIVQNEVWFKEQKKHHVIHVVHNFSSKLLVNTTKYSRSSTVM 130


>U49956-1|AAO38615.1|  669|Caenorhabditis elegans Hypothetical
           protein M03A1.3 protein.
          Length = 669

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 480 IGFFYCVLHALNTLNLNAYKNV 545
           IG F+C+  AL+ L +N YKNV
Sbjct: 331 IGVFFCIAVALSLLVVNGYKNV 352


>U50308-5|AAG24033.2|  284|Caenorhabditis elegans Seven tm receptor
           protein 94 protein.
          Length = 284

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 359 YMDVLKLPKNF---KYAISTYL*IVLFYNIIVLVLDGYVISIINWFLLLCSTCIKY 517
           Y+ + +  +NF   KY +  +    L+Y+II ++    + S +N F++ C++  KY
Sbjct: 27  YLIITRTRQNFGSYKYLMLWFAAFSLWYSIIDILTQPAMHSYLNSFIVFCASWFKY 82


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 473 IINWFLLLCSTCIKYF 520
           II+W LLLC +C+K F
Sbjct: 5   IISWTLLLCLSCVKSF 20


>AF067613-4|AAU20845.1|  327|Caenorhabditis elegans Hypothetical
           protein F56D6.7 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 428 FYNIIVLVLDGYVISIINWFLLLCSTCIKYFKFKCL*KCIWK-IIMQ*HAILKI 586
           FY  +VL++ GYVI ++    L  ++ + Y  F  L    W  +I+  H I+++
Sbjct: 66  FYKTVVLMIIGYVIVVLLVLFLATNSILSYIGFLSL--PAWALVIVTYHLIVEV 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,295,826
Number of Sequences: 27780
Number of extensions: 294229
Number of successful extensions: 665
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)